CSPI03G21530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LINE-1 reverse transcriptase isogeny
Location	Chr3 : 17820330 .. 17821172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGGTAAATTACGGATGCCATTTTGATTGCAAATGAAGCGGTGGATTTCTAGAAGCAGAAAAAGGCAAAAGGATATGTGCTCAAGCTTGACATCGAAAAGGCTTTTGATAAAATAAACTAGACTTTCATCGATTTTATACTGCAAAAGAAAGGCTTCCCACAAAAATGGTGTAATTGGATTGAAGTTTGTATTACTAGTGTTCAATACTCCATCCTTATCAACGGCAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA

mRNA sequence

ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA

Coding sequence (CDS)

ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA

Homology

[Close]

BLAST of CSPI03G21530 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-09
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 86  LAFVRGRPKGKIKPTRGIRQGDPISPFIFVLAMDYLSILLNHLEKKNLIKGVSF-NGKHN 145
           L  + G P+G + P+RG+RQGDP+SP++F+L  + LS L    +++  + G+   N    
Sbjct: 11  LFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPR 70

Query: 146 LTHLLFVDD 154
           + HLLF DD
Sbjct: 71  INHLLFADD 79

[Close]

BLAST of CSPI03G21530 vs. TrEMBL
Match: A6YTD8_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 62  YKLIAKVIAEKLKQVMSDIISENQLAFV-RGRPKGKIKPTRGIRQGDPISPFIFVLAMDY 121
           Y L+ K    +L+  +   IS  Q + +  GRP+GK +P+RGI QGDPISPFIFVLAMDY
Sbjct: 141 YMLLKKGYPHRLRNWIKAYISSVQYSIIINGRPRGKFQPSRGIHQGDPISPFIFVLAMDY 200

Query: 122 LSILLNHLEKKNLIKGVSFNGKHNLTHLLFVDDILLFMEDDEETINNMRNALRLFELASG 181
           LS L+  L  K  IKGVS N   NLTHLLF  DILLF+ED+E+++ N+RN + LF+LA G
Sbjct: 201 LSRLIETLVDK--IKGVSLNDNLNLTHLLFAYDILLFVEDNEDSLKNLRNVIHLFQLALG 260

Query: 182 LNINLNKSMISPINIDTQRTNYVA 205
           +N+NLNKS ISP+N+   RTN VA
Sbjct: 261 INVNLNKSTISPVNLGASRTNQVA 282

[Close]

BLAST of CSPI03G21530 vs. TrEMBL
Match: A5AWH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000114 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.4e-34
Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1


Query: 3   FLKGTWNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTGLY 62
           F +  W+  KE I E+F +FH        +N+TF+ LI KK       D+RPISL  GLY
Sbjct: 293 FWQRCWDFIKEEILELFKEFHDQNTFLKSINNTFLVLIPKKGGAEDFGDFRPISLLGGLY 352

Query: 63  KLIAKVIAEKLKQVMSDIISENQLAFVR--------GRPKGKIKPTRGIRQGDPISPFIF 122
           KL+AKV+A +LK+++  ++S +Q AFV+        G P G    ++G+RQGDP+SP++F
Sbjct: 353 KLVAKVLANRLKKIIDKVVSHDQNAFVKAKFSVMVNGSPAGFFSSSKGLRQGDPLSPYLF 412

Query: 123 VLAMDYLSILLNHLEKKNLIKGVSFNGKH----NLTHLLFVDDILLFMEDDEETINNMRN 182
           ++ M+ LS+L+    +   I G           ++ HLLF DD ++F E  +E + N+  
Sbjct: 413 IMGMEVLSVLIRRAMEGGFISGCKIQRNRGRAVHIAHLLFADDTIVFCEAKKEYLTNLSW 472

Query: 183 ALRLFELASGLNINLNKSMISPINIDTQRTNYVAAK 207
            L  FE ASGL INL KS + P+  + QR   +A +
Sbjct: 473 ILFWFEAASGLKINLAKSEVIPVG-EVQRIEELAVE 507

[Close]

BLAST of CSPI03G21530 vs. TrEMBL
Match: A5B9F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.9e-33
Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 1


Query: 8    WNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTGLYKLIAK 67
            W++ KE++  +F++FH++ IIN   N++FI L+ KK      SDYRPISL T LYK+IAK
Sbjct: 1247 WDMIKEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKLSDYRPISLITSLYKIIAK 1306

Query: 68   VIAEKLKQVMSDIISENQLAFVRGRP--------------------------KGKIKPTR 127
            V+A +L+ V+ + I   Q AFV+GR                           KG +K +R
Sbjct: 1307 VLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEVNGNAKGWVKTSR 1366

Query: 128  GIRQGDPISPFIFVLAMDYLSILLNHLEKKNLIKGVSF-NGKHNLTHLLFVDDILLFMED 187
            G+RQGDP+SPF+F +  D +S +L   E++N+ +G      +  ++HL F DD + F   
Sbjct: 1367 GLRQGDPLSPFLFTIVADVMSRMLLRAEERNVFEGFRVGRNRTRVSHLQFADDTIFFSST 1426

Query: 188  DEETINNMRNALRLFELASGLNINLNKSMISPINIDTQRTNYVA 205
             EE +  +++ L +F   SGL +NL+KS I  IN+     + +A
Sbjct: 1427 REEDLLTLKSVLLVFGHISGLKVNLDKSNIYGINLGQDHLHRLA 1470

[Close]

BLAST of CSPI03G21530 vs. TrEMBL
Match: A0A151RPU0_CAJCA (Transposon TX1 uncharacterized (Fragment) OS=Cajanus cajan GN=KK1_033913 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = 1


Query: 1   MEFLKGTWNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTG 60
           M F+K  W++ K +I+    DF ++  +    NS+F+ LI K  +     D+RPISL   
Sbjct: 246 MLFIKKCWDILKIDIYNAVQDFQEHGKLPRGTNSSFLVLIQKNSSPQDLGDFRPISLIRS 305

Query: 61  LYKLIAKVIAEKLKQVMSDIISENQLAFVRGRPKGKIKPTRGIRQGDPISPFIFVLAMDY 120
           LYK+IAK++A ++K+V+SDII E   AFV     G+ K ++G+RQGDP++PF+F++  + 
Sbjct: 306 LYKIIAKLLAGRIKEVISDIIPEYHYAFV-----GEFKMSKGLRQGDPLAPFLFLIVAEG 365

Query: 121 LSILLNHLEKKNLIKGVSFNGKH-NLTHLLFVDDILLFMEDDEETINNMRNALRLFELAS 180
           L  L+    K  L +G S      N+THL FVDD LL  +   E + +++  LR FEL S
Sbjct: 366 LGGLMREATKGRLFEGFSIGQMDLNITHLQFVDDTLLIGKPSWENVRSLKAILRCFELVS 425

Query: 181 GLNINLNKSMISPINIDTQ 199
           GL +N +KS +  I+++ Q
Sbjct: 426 GLKVNFSKSRLIGIHVEEQ 439

[Close]

BLAST of CSPI03G21530 vs. TrEMBL
Match: A5BA37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036806 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29
Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 1


Query: 3   FLKGTWNLTKENIFEIFNDFHK-NCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTGL 62
           F +  W   KE + E+F +FH+ N  + S +N  F+ L+ KK       D+RPISL  GL
Sbjct: 86  FWQCCWEFVKEEVLEMFKEFHEQNAFLKSFINM-FLVLLPKKGGAEELGDFRPISLLGGL 145

Query: 63  YKLIAKVIAEKLKQVMSDIISENQLAF----VRGRPKGKIKPTRGIRQGDPISPFIFVLA 122
           YKL+AKV+A ++K+V+  ++S +Q AF    V G+P G    ++G+ QGDP+SP++FV+ 
Sbjct: 146 YKLLAKVLANRIKKVIGKVVSPDQNAFVMVLVNGKPAGFFPNSKGLCQGDPLSPYLFVMG 205

Query: 123 MDYLSILLNHLEKKNLIKGVSFNGKH----NLTHLLFVDDILLFMEDDEETINNMRNALR 182
           M+ LS+L+    +   I G +         N++HLLF +D ++F E  +E +  +   L 
Sbjct: 206 MEVLSVLIRRAVEGGFISGCNIRRGSGPVANISHLLFANDTIVFCEAKKEDMTYLSWILC 265

Query: 183 LFELASGLNINLNKSMISPI 194
            FE  S L INL KS I P+
Sbjct: 266 WFEAVSRLRINLAKSEIIPV 284

[Close]

BLAST of CSPI03G21530 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase))

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 86  LAFVRGRPKGKIKPTRGIRQGDPISPFIFVLAMDYLSILLNHLEKKNLIKGVSF-NGKHN 145
           L  + G P+G + P+RG+RQGDP+SP++F+L  + LS L    +++  + G+   N    
Sbjct: 11  LFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPR 70

Query: 146 LTHLLFVDD 154
           + HLLF DD
Sbjct: 71  INHLLFADD 79

[Close]

BLAST of CSPI03G21530 vs. NCBI nr
Match: gi|150036245|gb|ABR67408.1| (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 62  YKLIAKVIAEKLKQVMSDIISENQLAFV-RGRPKGKIKPTRGIRQGDPISPFIFVLAMDY 121
           Y L+ K    +L+  +   IS  Q + +  GRP+GK +P+RGI QGDPISPFIFVLAMDY
Sbjct: 141 YMLLKKGYPHRLRNWIKAYISSVQYSIIINGRPRGKFQPSRGIHQGDPISPFIFVLAMDY 200

Query: 122 LSILLNHLEKKNLIKGVSFNGKHNLTHLLFVDDILLFMEDDEETINNMRNALRLFELASG 181
           LS L+  L  K  IKGVS N   NLTHLLF  DILLF+ED+E+++ N+RN + LF+LA G
Sbjct: 201 LSRLIETLVDK--IKGVSLNDNLNLTHLLFAYDILLFVEDNEDSLKNLRNVIHLFQLALG 260

Query: 182 LNINLNKSMISPINIDTQRTNYVA 205
           +N+NLNKS ISP+N+   RTN VA
Sbjct: 261 INVNLNKSTISPVNLGASRTNQVA 282

[Close]

BLAST of CSPI03G21530 vs. NCBI nr
Match: gi|147787926|emb|CAN73852.1| (hypothetical protein VITISV_000114 [Vitis vinifera])

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1


Query: 3   FLKGTWNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTGLY 62
           F +  W+  KE I E+F +FH        +N+TF+ LI KK       D+RPISL  GLY
Sbjct: 293 FWQRCWDFIKEEILELFKEFHDQNTFLKSINNTFLVLIPKKGGAEDFGDFRPISLLGGLY 352

Query: 63  KLIAKVIAEKLKQVMSDIISENQLAFVR--------GRPKGKIKPTRGIRQGDPISPFIF 122
           KL+AKV+A +LK+++  ++S +Q AFV+        G P G    ++G+RQGDP+SP++F
Sbjct: 353 KLVAKVLANRLKKIIDKVVSHDQNAFVKAKFSVMVNGSPAGFFSSSKGLRQGDPLSPYLF 412

Query: 123 VLAMDYLSILLNHLEKKNLIKGVSFNGKH----NLTHLLFVDDILLFMEDDEETINNMRN 182
           ++ M+ LS+L+    +   I G           ++ HLLF DD ++F E  +E + N+  
Sbjct: 413 IMGMEVLSVLIRRAMEGGFISGCKIQRNRGRAVHIAHLLFADDTIVFCEAKKEYLTNLSW 472

Query: 183 ALRLFELASGLNINLNKSMISPINIDTQRTNYVAAK 207
            L  FE ASGL INL KS + P+  + QR   +A +
Sbjct: 473 ILFWFEAASGLKINLAKSEVIPVG-EVQRIEELAVE 507

[Close]

BLAST of CSPI03G21530 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 80/144 (55.56%), Postives = 103/144 (71.53%), Query Frame = 1


Query: 62  YKLIAKVIAEKLKQVMSDIISENQ-LAFVRGRPKGKIKPTRGIRQGDPISPFIFVLAMDY 121
           Y L  K    K ++ ++  IS  Q    + G PKG+IK  RGIRQGDP+SPFIFV+AMDY
Sbjct: 51  YMLAKKHFPLKWRKWINACISNVQYFILLNGSPKGRIKAERGIRQGDPLSPFIFVIAMDY 110

Query: 122 LSILLNHLEKKNLIKGVSFNGKHNLTHLLFVDDILLFMEDDEETINNMRNALRLFELASG 181
           LS LL+HLE K  IKGVSFN   N++HLLF DD+L+F+ED+E+ ++N++ AL LFE ASG
Sbjct: 111 LSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEKASG 170

Query: 182 LNINLNKSMISPINIDTQRTNYVA 205
           L  N +KS ISPINI   RT+ +A
Sbjct: 171 LTFNHSKSTISPINISADRTDQIA 194

[Close]

BLAST of CSPI03G21530 vs. NCBI nr
Match: gi|147838411|emb|CAN74319.1| (hypothetical protein VITISV_035345 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 1


Query: 8    WNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTGLYKLIAK 67
            W++ KE++  +F++FH++ IIN   N++FI L+ KK      SDYRPISL T LYK+IAK
Sbjct: 1247 WDMIKEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKLSDYRPISLITSLYKIIAK 1306

Query: 68   VIAEKLKQVMSDIISENQLAFVRGRP--------------------------KGKIKPTR 127
            V+A +L+ V+ + I   Q AFV+GR                           KG +K +R
Sbjct: 1307 VLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEVNGNAKGWVKTSR 1366

Query: 128  GIRQGDPISPFIFVLAMDYLSILLNHLEKKNLIKGVSF-NGKHNLTHLLFVDDILLFMED 187
            G+RQGDP+SPF+F +  D +S +L   E++N+ +G      +  ++HL F DD + F   
Sbjct: 1367 GLRQGDPLSPFLFTIVADVMSRMLLRAEERNVFEGFRVGRNRTRVSHLQFADDTIFFSST 1426

Query: 188  DEETINNMRNALRLFELASGLNINLNKSMISPINIDTQRTNYVA 205
             EE +  +++ L +F   SGL +NL+KS I  IN+     + +A
Sbjct: 1427 REEDLLTLKSVLLVFGHISGLKVNLDKSNIYGINLGQDHLHRLA 1470

[Close]

BLAST of CSPI03G21530 vs. NCBI nr
Match: gi|1012333163|gb|KYP44566.1| (Transposon TX1 uncharacterized, partial [Cajanus cajan])

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = 1


Query: 1   MEFLKGTWNLTKENIFEIFNDFHKNCIINSIVNSTFIALIAKKETCSAPSDYRPISLTTG 60
           M F+K  W++ K +I+    DF ++  +    NS+F+ LI K  +     D+RPISL   
Sbjct: 246 MLFIKKCWDILKIDIYNAVQDFQEHGKLPRGTNSSFLVLIQKNSSPQDLGDFRPISLIRS 305

Query: 61  LYKLIAKVIAEKLKQVMSDIISENQLAFVRGRPKGKIKPTRGIRQGDPISPFIFVLAMDY 120
           LYK+IAK++A ++K+V+SDII E   AFV     G+ K ++G+RQGDP++PF+F++  + 
Sbjct: 306 LYKIIAKLLAGRIKEVISDIIPEYHYAFV-----GEFKMSKGLRQGDPLAPFLFLIVAEG 365

Query: 121 LSILLNHLEKKNLIKGVSFNGKH-NLTHLLFVDDILLFMEDDEETINNMRNALRLFELAS 180
           L  L+    K  L +G S      N+THL FVDD LL  +   E + +++  LR FEL S
Sbjct: 366 LGGLMREATKGRLFEGFSIGQMDLNITHLQFVDDTLLIGKPSWENVRSLKAILRCFELVS 425

Query: 181 GLNINLNKSMISPINIDTQ 199
           GL +N +KS +  I+++ Q
Sbjct: 426 GLKVNFSKSRLIGIHVEEQ 439

The following BLAST results are available for this feature:

BLAST of CSPI03G21530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M1250_ARATH	3.9e-09	39.13	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI03G21530 vs. TrEMBL


Match Name	E-value	Identity	Description
A6YTD8_CUCME	1.4e-34	56.25	Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5AWH6_VITVI	9.4e-34	37.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000114 PE=4 SV=1	[more]
A5B9F0_VITVI	7.9e-33	36.61	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1	[more]
A0A151RPU0_CAJCA	3.3e-31	39.20	Transposon TX1 uncharacterized (Fragment) OS=Cajanus cajan GN=KK1_033913 PE=4 SV...	[more]
A5BA37_VITVI	5.3e-29	38.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036806 PE=4 SV=1	[more]

BLAST of CSPI03G21530 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG01250.1	2.2e-10	39.13	ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)	[more]

BLAST of CSPI03G21530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|150036245\|gb\|ABR67408.1\|	2.1e-34	56.25	reverse transcriptase [Cucumis melo subsp. melo]	[more]
gi\|147787926\|emb\|CAN73852.1\|	1.3e-33	37.96	hypothetical protein VITISV_000114 [Vitis vinifera]	[more]
gi\|659130833\|ref\|XP_008465376.1\|	1.8e-33	55.56	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|147838411\|emb\|CAN74319.1\|	1.1e-32	36.61	hypothetical protein VITISV_035345 [Vitis vinifera]	[more]
gi\|1012333163\|gb\|KYP44566.1\|	4.8e-31	39.20	Transposon TX1 uncharacterized, partial [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21530.1	CSPI03G21530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 91..191 score: 4.8
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 1..206 score: 1
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 2..193 score: 5.4
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 2..193 score: 5.4
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 95..191 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21530	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21530	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21530	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21530	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21530	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21530	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21530	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21530	Watermelon (97103) v1	cpiwmB245
CSPI03G21530	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21530	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21530	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21530	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21530	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21530	Silver-seed gourd	carcpiB0545
CSPI03G21530	Silver-seed gourd	carcpiB0798
CSPI03G21530	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21530	Watermelon (97103) v2	cpiwmbB224
CSPI03G21530	Wax gourd	cpiwgoB271
CSPI03G21530	Cucumber (Gy14) v1	cgycpiB554