CSPI03G21480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 17732862 .. 17733431 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGGTTCCTAAATAACACAATGTGGTTGACTTTCTACTATTTTATATATGTACTTATATGCTATGTTTTATTTTGAATATGCCTAAACCCTAAACCGTAATATAATCTACACTAACAAAAAAAATTTAATGTTGCTTTGACAGGATATTCTACTTACACATGAAGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA

mRNA sequence

ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA

Coding sequence (CDS)

ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA
Homology
[Close]
BLAST of CSPI03G21480 vs. TrEMBL
Match: A5ALA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030059 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           +A+QA++VFYVED  D +WSIV + P +D  +    D+  D  + H   + S MP ++  
Sbjct: 691 LASQAKQVFYVEDQLDPKWSIVLSIPPKDFNNMEGXDDFTDNCMEHHPFI-SSMPEVESF 750

Query: 61  IDLDENISTYVRLDCEGTW 80
             +DE+ + Y+R DCEG W
Sbjct: 751 DVMDESDAIYMREDCEGIW 768

[Close]
BLAST of CSPI03G21480 vs. TrEMBL
Match: A5AKV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035671 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-08
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 1    MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
            +A+QA++VFYVED  D +WSIV + P +D  +    D+  D  + H   + S MP ++  
Sbjct: 1986 LASQAKQVFYVEDQLDPKWSIVLSIPPKDFNNMEGLDDFTDNCMEHHPFI-SSMPEVESF 2045

Query: 61   IDLDENISTYVRLDCEGTW 80
              +DE+ + Y+R DCEG W
Sbjct: 2046 DVMDESXAXYMREDCEGIW 2063

[Close]
BLAST of CSPI03G21480 vs. TrEMBL
Match: A5CB63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040314 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           +A+QA+ VFYVED  D +WSIV + P +D  +    D+  D  + H   + S MP ++  
Sbjct: 883 LASQAKXVFYVEDQLDPKWSIVLSIPPKDFNNMEGLDDFTDNCMEHHPFI-SSMPKVESF 942

Query: 61  IDLDENISTYVRLDCEGTW 80
             +DE+ + Y+R DCEG W
Sbjct: 943 DVMDESDAIYMREDCEGIW 960

[Close]
BLAST of CSPI03G21480 vs. TrEMBL
Match: A5AXA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023303 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           + +QA++VFYV+D  D +WSIV + P +D  +    D+  D  + H   + S MP ++  
Sbjct: 166 LGSQAKQVFYVDDQLDPKWSIVLSIPPKDFNNMEGLDDFTDNCMEHHPFI-SSMPEVESF 225

Query: 61  IDLDENISTYVRLDCEGTW 80
             +DE+ + Y+R DCEG W
Sbjct: 226 NVMDESEAIYMREDCEGIW 243

[Close]
BLAST of CSPI03G21480 vs. TrEMBL
Match: W1P4B7_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00725p00005970 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 43/139 (30.94%), Postives = 70/139 (50.36%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIM---LLHSQGVPSDMPNI 60
           MA+QA +VFY+ DP++ +WSIV + P+R   +   D+E  D+     +  Q +   +  I
Sbjct: 244 MASQAAQVFYISDPANDKWSIVLSTPERRFLETEEDEENADLCYDDFIVGQPIHEQLMGI 303

Query: 61  DDNIDLDENISTYVRLDC-EGTWPNIVT-----DDKDKDVSRLVVGGVDDQIEEKPKRQR 120
           D NI+ D+  + Y+R D  EG W N  +       K K ++    G       E P    
Sbjct: 304 DRNIEEDD--AEYIRNDINEGIWVNCDSGKHKQKKKRKHMANSESGSDSGAENECPTTIP 363

Query: 121 KRGPTIMFDETRVRSEGER 131
            RGPT M + +++  +G+R
Sbjct: 364 TRGPTQMNEISKLMDQGKR 380

[Close]
BLAST of CSPI03G21480 vs. NCBI nr
Match: gi|659133664|ref|XP_008466847.1| (PREDICTED: uncharacterized protein LOC103504152, partial [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-31
Identity = 78/119 (65.55%), Postives = 91/119 (76.47%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPN+D  
Sbjct: 276 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNVDGG 335

Query: 61  IDLDENISTYV-RLDCEGTWPNIVTDDKDKDV-----SRLVVGGVDDQIEEKPKRQRKR 114
            DLD+N+STY+  L  E   P IV DD+DK V       LVVG VD+  + K +++R++
Sbjct: 336 NDLDQNMSTYIFSLHME---PTIVRDDQDKKVGGAKIDGLVVGVVDEHDKRKLQQERRK 390

[Close]
BLAST of CSPI03G21480 vs. NCBI nr
Match: gi|659087168|ref|XP_008444308.1| (PREDICTED: uncharacterized protein LOC103487677 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           M TQAR+VFYVEDPSDARWSIV TPPQRDCEDQ NDDELGDIM LH QGVPSDMPNID  
Sbjct: 295 METQARQVFYVEDPSDARWSIVLTPPQRDCEDQLNDDELGDIM-LHCQGVPSDMPNIDRG 354

Query: 61  IDLDENISTY 71
            DLDEN+STY
Sbjct: 355 NDLDENMSTY 363

[Close]
BLAST of CSPI03G21480 vs. NCBI nr
Match: gi|659098566|ref|XP_008450202.1| (PREDICTED: uncharacterized protein LOC103491863 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIML 45
           MATQAR+VFYVEDPSDARWSIV TPPQRDCE QSNDDELGD ML
Sbjct: 287 MATQARQVFYVEDPSDARWSIVLTPPQRDCEGQSNDDELGDTML 330

[Close]
BLAST of CSPI03G21480 vs. NCBI nr
Match: gi|659131091|ref|XP_008465505.1| (PREDICTED: uncharacterized protein LOC103503126 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1 

Query: 1    MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIML--LHSQGVPSDMPNID 60
            +A+QA++VF++EDPSD++W +V  PP R+ ED  NDDELGDI L  + S  VP    N+ 
Sbjct: 957  LASQAKQVFFLEDPSDSQWHVVLNPPNREYEDHINDDELGDISLNCISSNNVPM---NVF 1016

Query: 61   DNIDLDENISTYVRLDCEG 78
            + I+ DE+   Y+R DC+G
Sbjct: 1017 EEIN-DEDDPNYMRTDCDG 1031

[Close]
BLAST of CSPI03G21480 vs. NCBI nr
Match: gi|659128061|ref|XP_008464026.1| (PREDICTED: uncharacterized protein LOC103502010 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 8.1e-11
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 3   TQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDNID 62
           T  +KVFYV DP D RWS+V  PPQ+D   +  +DELGD ML H   V       +   D
Sbjct: 134 TTRKKVFYVSDPVDLRWSVVLMPPQKDILYKCANDELGD-MLSHYPPV----SKWNSTSD 193

Query: 63  LDENISTYVRLDCEGTW 80
           +DEN  TY R+DCEGTW
Sbjct: 194 IDENGDTYTRVDCEGTW 205

The following BLAST results are available for this feature:
BLAST of CSPI03G21480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G21480 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ALA4_VITVI3.4e-0839.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030059 PE=4 SV=1[more]
A5AKV0_VITVI4.5e-0839.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035671 PE=4 SV=1[more]
A5CB63_VITVI1.3e-0739.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040314 PE=4 SV=1[more]
A5AXA7_VITVI4.9e-0736.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023303 PE=4 SV=1[more]
W1P4B7_AMBTC6.5e-0730.94Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00725p00005970 PE=4 SV=... [more]
BLAST of CSPI03G21480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G21480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133664|ref|XP_008466847.1|7.0e-3165.55PREDICTED: uncharacterized protein LOC103504152, partial [Cucumis melo][more]
gi|659087168|ref|XP_008444308.1|2.6e-2585.71PREDICTED: uncharacterized protein LOC103487677 [Cucumis melo][more]
gi|659098566|ref|XP_008450202.1|2.1e-1490.91PREDICTED: uncharacterized protein LOC103491863 [Cucumis melo][more]
gi|659131091|ref|XP_008465505.1|3.6e-1148.10PREDICTED: uncharacterized protein LOC103503126 [Cucumis melo][more]
gi|659128061|ref|XP_008464026.1|8.1e-1150.65PREDICTED: uncharacterized protein LOC103502010 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21480.1CSPI03G21480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G21480Wax gourdcpiwgoB271
CSPI03G21480Cucumber (Gy14) v1cgycpiB554
CSPI03G21480Cucurbita maxima (Rimu)cmacpiB244
CSPI03G21480Cucurbita maxima (Rimu)cmacpiB458
CSPI03G21480Cucurbita moschata (Rifu)cmocpiB232
CSPI03G21480Cucurbita moschata (Rifu)cmocpiB446
CSPI03G21480Cucumber (Chinese Long) v2cpicuB120
CSPI03G21480Melon (DHL92) v3.5.1cpimeB243
CSPI03G21480Watermelon (Charleston Gray)cpiwcgB240
CSPI03G21480Watermelon (97103) v1cpiwmB245
CSPI03G21480Cucurbita pepo (Zucchini)cpecpiB552
CSPI03G21480Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G21480Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G21480Melon (DHL92) v3.6.1cpimedB240
CSPI03G21480Cucumber (Gy14) v2cgybcpiB110
CSPI03G21480Silver-seed gourdcarcpiB0545
CSPI03G21480Silver-seed gourdcarcpiB0798
CSPI03G21480Cucumber (Chinese Long) v3cpicucB144
CSPI03G21480Watermelon (97103) v2cpiwmbB224