CSPI03G21100 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 17161185 .. 17161829 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA

mRNA sequence

ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA

Coding sequence (CDS)

ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA
Homology
[Close]
BLAST of CSPI03G21100 vs. NCBI nr
Match: gi|778730782|ref|XP_011659856.1| (PREDICTED: cell wall protein RBR3-like [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 76/218 (34.86%), Postives = 99/218 (45.41%), Query Frame = 1 

Query: 1   MHGVCMHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIH-AEALGVFHVSIDLDSGF 60
           MHGV M  K  KSIPS R Y  +ADRGK+  T+S  SS S+           S DL    
Sbjct: 1   MHGVRMRGKRVKSIPSRRPYSRMADRGKVSYTMSSSSSESVQDVPTTMAASASSDL---- 60

Query: 61  VSRDTVPLAELHKSHFGLTPSTSKSHGQGSIPSSSKGKGSMP---SGPSKSLSYSTSSSS 120
             +D +PL EL +       S  +   +    + SK KG  P   S    S S S   S+
Sbjct: 61  --QDQIPLTELLRKKTQSRSSVPEGVSKSPKLNVSKEKGKAPMSDSSTDASSSTSVPMSN 120

Query: 121 KTLPQQRSSDPLSGTIPFVSPPHDSLSVPSTPSLPMVHGSVPSPCAIEYSVHTSLKKSKS 180
           +      SS  LS   P   PP  + + P + S P      P   A + +  TS    ++
Sbjct: 121 RQSFGSSSSHKLSDA-PTQVPPSPAPAQPYSSSQPAAAQPAPPSSATKEADKTSSPPPQT 180

Query: 181 SM-RPRVVTTKISQQKLSCNIQFVLIDDITFHHEENAQ 214
            +  PR VT K  ++ L  NI  V ID I+FHHEENAQ
Sbjct: 181 KVPEPRGVTIKTGRRCLPRNIPSVPIDGISFHHEENAQ 211

The following BLAST results are available for this feature:
BLAST of CSPI03G21100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G21100 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI03G21100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G21100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730782|ref|XP_011659856.1|1.4e-0934.86PREDICTED: cell wall protein RBR3-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21100.1CSPI03G21100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G21100Cucurbita maxima (Rimu)cmacpiB244
CSPI03G21100Cucurbita maxima (Rimu)cmacpiB458
CSPI03G21100Cucurbita moschata (Rifu)cmocpiB232
CSPI03G21100Cucurbita moschata (Rifu)cmocpiB446
CSPI03G21100Cucumber (Chinese Long) v2cpicuB120
CSPI03G21100Melon (DHL92) v3.5.1cpimeB243
CSPI03G21100Watermelon (Charleston Gray)cpiwcgB230
CSPI03G21100Watermelon (97103) v1cpiwmB236
CSPI03G21100Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G21100Bottle gourd (USVL1VR-Ls)cpilsiB203
CSPI03G21100Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G21100Melon (DHL92) v3.6.1cpimedB240
CSPI03G21100Cucumber (Gy14) v2cgybcpiB110
CSPI03G21100Silver-seed gourdcarcpiB0519
CSPI03G21100Silver-seed gourdcarcpiB0520
CSPI03G21100Silver-seed gourdcarcpiB0798
CSPI03G21100Cucumber (Chinese Long) v3cpicucB144
CSPI03G21100Watermelon (97103) v2cpiwmbB213
CSPI03G21100Watermelon (97103) v2cpiwmbB224
CSPI03G21100Wax gourdcpiwgoB271
CSPI03G21100Wax gourdcpiwgoB303