CSPI01G30780 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G30780
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 25285386 .. 25286417 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTTGAGAGAGCAGCTCTGGAGTTCAGGAGGAGCCTGATCCATTCTTCAAAGGGTTTCTAAATCAATTCAGGAGAATTGAGTTTTATGTTTAGTTATGATATGACTATTCAATGCAATCCATGTGACAAGTTATATATTGAGAATCTCAATAATATTCCATATCCGAGCAGAGAAGCTCTCTAGATATAGGCAACATTTGTCGAACTGGGTTAACAAAGTATTTTGTATTCTTTGTTTATACTCTCTAGTTAAACGTTTAGTTAAGTACTTATGGTATAACTAAAATGTATTTAACTTATATCTTTTTCAATTGGTATAAGAGCAGTTCGATATAAATGGAAGCGTCTGTACTGGATGGAAAAAATTACTCCTATTGGAAGACTTGAATGGTCTCATATCTAAAATCCTTGGATGCAAAGGCTTGGAAGGCTGTCAAGACTGGATGGACACCACCCATGATGATTGTTGACAGAAAGTCAGTACCTAAGCCTGAGGAAAATTGGGACTGATGCAGAAGAACAGGGTTCTTTGGGAAATTCCCGAGCTCTCAATGCTATATACAATGGGGTTGATCTGAATATGTTCAAGCTAATCAGCTTGTGTGCTACTGCGAAAGAAGCATGGAGAAAAATGGAGATAACATTTGAAGGAACTTCCAAAGTCAAAACATCTCGTGTACTGTTGTTAACTTCTAAATTCGAATCACTAAGAATGATGGAAGAAGAAACTATCACAAAGAATAATGTTCGAGAACTGGAAATAGCCAATGATGCATTTAATCTTGGTGAAGGAATCTCAGAAGCAAGATTGGTAAGGAAAGTGTTACGCTCTTTACCAAAGAGATTCGATATGAAAGTCATCGCGATTGAAGGAGCACATGATGTCACTACTCTCTCGCTTGATGAAATGATTGGTTCATTGCTCACATTTGAAATTTCACTTACCGAAAAAGCAGAAAATAAAGGCAAAGGGGTGGCGTTTCCATCCATCCAAGAAGAAGCATATCTAGAAAAGGGAAAGGCTTAA

mRNA sequence

ATGGGAGTTGAGAGAGCAGCTCTGGAGTTCAGGAGGAGCCTGATCCATTCTTCAAAGGAAAGTCAGTACCTAAGCCTGAGGAAAATTGGGACTGATGCAGAAGAACAGGGTTCTTTGGGAAATTCCCGAGCTCTCAATGCTATATACAATGGGGTTGATCTGAATATGTTCAAGCTAATCAGCTTGTGTGCTACTGCGAAAGAAGCATGGAGAAAAATGGAGATAACATTTGAAGGAACTTCCAAAGTCAAAACATCTCGTGTACTGTTGTTAACTTCTAAATTCGAATCACTAAGAATGATGGAAGAAGAAACTATCACAAAGAATAATGTTCGAGAACTGGAAATAGCCAATGATGCATTTAATCTTGGTGAAGGAATCTCAGAAGCAAGATTGGTAAGGAAAGTGTTACGCTCTTTACCAAAGAGATTCGATATGAAAGTCATCGCGATTGAAGGAGCACATGATGTCACTACTCTCTCGCTTGATGAAATGATTGGTTCATTGCTCACATTTGAAATTTCACTTACCGAAAAAGCAGAAAATAAAGGCAAAGGGGTGGCGTTTCCATCCATCCAAGAAGAAGCATATCTAGAAAAGGGAAAGGCTTAA

Coding sequence (CDS)

ATGGGAGTTGAGAGAGCAGCTCTGGAGTTCAGGAGGAGCCTGATCCATTCTTCAAAGGAAAGTCAGTACCTAAGCCTGAGGAAAATTGGGACTGATGCAGAAGAACAGGGTTCTTTGGGAAATTCCCGAGCTCTCAATGCTATATACAATGGGGTTGATCTGAATATGTTCAAGCTAATCAGCTTGTGTGCTACTGCGAAAGAAGCATGGAGAAAAATGGAGATAACATTTGAAGGAACTTCCAAAGTCAAAACATCTCGTGTACTGTTGTTAACTTCTAAATTCGAATCACTAAGAATGATGGAAGAAGAAACTATCACAAAGAATAATGTTCGAGAACTGGAAATAGCCAATGATGCATTTAATCTTGGTGAAGGAATCTCAGAAGCAAGATTGGTAAGGAAAGTGTTACGCTCTTTACCAAAGAGATTCGATATGAAAGTCATCGCGATTGAAGGAGCACATGATGTCACTACTCTCTCGCTTGATGAAATGATTGGTTCATTGCTCACATTTGAAATTTCACTTACCGAAAAAGCAGAAAATAAAGGCAAAGGGGTGGCGTTTCCATCCATCCAAGAAGAAGCATATCTAGAAAAGGGAAAGGCTTAA
Homology
[Close]
BLAST of CSPI01G30780 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-42
Identity = 97/186 (52.15%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++IT EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE I+
Sbjct: 108 AWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERIT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++AE K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-42
Identity = 97/186 (52.15%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++IT EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE I+
Sbjct: 108 AWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERIT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++AE K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 6.0e-41
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 21  EHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 80

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++ T EGTSKVK SR+ LL +KFE+L+M EEE I + ++  LEIAN    LGE ++
Sbjct: 81  AWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILEIANACTALGERMT 140

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++ E K K +A
Sbjct: 141 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLA 200

Query: 189 FPSIQE 195
           F S  E
Sbjct: 201 FVSNDE 206

[Close]
BLAST of CSPI01G30780 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.9e-41
Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++ T EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE ++
Sbjct: 108 AWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  L +DE+IGSL TFE+ L+++ E K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++ T EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE ++
Sbjct: 108 AWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++ E K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. NCBI nr
Match: gi|659109377|ref|XP_008454684.1| (PREDICTED: uncharacterized protein LOC103495039 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 5.0e-49
Identity = 99/165 (60.00%), Postives = 134/165 (81.21%), Query Frame = 1 

Query: 31  TDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKEAWRKMEITFEGTSKVKTSRVLL 90
           TDAEEQ S+GN+RA+N I+NGVDLN+FKLI  C TAKEAW+ +E+ +EGTSKVK  R+ L
Sbjct: 10  TDAEEQASVGNARAINVIFNGVDLNVFKLIDSCTTAKEAWKILEVAYEGTSKVKIFRLQL 69

Query: 91  LTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGISEARLVRKVLRSLPKRFDMKVIA 150
           +TSKFE+L+M+E+ET ++ N R LEIAND+  LGE I E+++VRKVLRSLP++FD+KV A
Sbjct: 70  VTSKFEALKMIEDETASEYNERVLEIANDSLLLGEKIHESKIVRKVLRSLPRKFDIKVTA 129

Query: 151 IEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVAFPSIQEE 196
           IE A D+TTL LDE+ GSLLTFE+++ ++   K K +AF S+ ++
Sbjct: 130 IEEAQDITTLKLDELFGSLLTFEMAMLDRESKKDKRIAFKSVYDQ 174

[Close]
BLAST of CSPI01G30780 vs. NCBI nr
Match: gi|659087166|ref|XP_008444307.1| (PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 101/168 (60.12%), Postives = 134/168 (79.76%), Query Frame = 1 

Query: 31  TDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKEAWRKMEITFEGTSKVKTSRVLL 90
           TD EEQ S+GN+RALNAI+NGVDLN+FKLI+ C+TAKEA + +E+ +EGTSKVK SR+ L
Sbjct: 17  TDVEEQASIGNARALNAIFNGVDLNVFKLINSCSTAKEALKTLEVAYEGTSKVKISRLQL 76

Query: 91  LTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGISEARLVRKVLRSLPKRFDMKVIA 150
           +TSKFE+L M E+E ++  N R LEIAN++  L E I ++++VRKVL+SLP+ F +KVIA
Sbjct: 77  ITSKFEALNMTEDEPVSDYNKRVLEIANESLMLDEKIPDSKIVRKVLQSLPRIFYLKVIA 136

Query: 151 IEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA--FPSIQEEA 197
           IE AHD+TTL LDE+ GSLLTFE++ T++   KGKG+A  F  + EEA
Sbjct: 137 IEEAHDITTLKLDELFGSLLTFEMATTDRESKKGKGIAFKFTHVSEEA 184

[Close]
BLAST of CSPI01G30780 vs. NCBI nr
Match: gi|29423270|gb|AAO73521.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 97/186 (52.15%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++IT EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE I+
Sbjct: 108 AWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERIT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++AE K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 97/186 (52.15%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 48  EHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 107

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++IT EGTSKVK SR+ LL +KFE+L+M EEE I   ++  LEIAN    LGE I+
Sbjct: 108 AWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERIT 167

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++AE K K +A
Sbjct: 168 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLA 227

Query: 189 FPSIQE 195
           F S  E
Sbjct: 228 FVSNDE 233

[Close]
BLAST of CSPI01G30780 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 175.6 bits (444), Expect = 8.6e-41
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 1 

Query: 9   EFRRSLIHSSKESQYLSLRKIGTDAEEQGSLGNSRALNAIYNGVDLNMFKLISLCATAKE 68
           E  + L    K +  L   +  T  E++ +LGNS+ALNA++NGVD N+F+LI+ C  AK+
Sbjct: 21  EHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKD 80

Query: 69  AWRKMEITFEGTSKVKTSRVLLLTSKFESLRMMEEETITKNNVRELEIANDAFNLGEGIS 128
           AW  ++ T EGTSKVK SR+ LL +KFE+L+M EEE I + ++  LEIAN    LGE ++
Sbjct: 81  AWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHEFHMNILEIANACTALGERMT 140

Query: 129 EARLVRKVLRSLPKRFDMKVIAIEGAHDVTTLSLDEMIGSLLTFEISLTEKAENKGKGVA 188
           + +LVRK+LRSLPKRFDMKV AIE A D+  + +DE+IGSL TFE+ L+++ E K K +A
Sbjct: 141 DEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLA 200

Query: 189 FPSIQE 195
           F S  E
Sbjct: 201 FVSNDE 206

The following BLAST results are available for this feature:
BLAST of CSPI01G30780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G30780 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84VH8_SOYBN4.2e-4252.15Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI4_SOYBN4.2e-4252.15Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
O65147_SOYBN6.0e-4150.54Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2[more]
V9H042_SOYBN7.9e-4151.08Gag-protease polyprotein OS=Glycine max PE=2 SV=1[more]
Q84VH6_SOYBN1.3e-4050.54Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
BLAST of CSPI01G30780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G30780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109377|ref|XP_008454684.1|5.0e-4960.00PREDICTED: uncharacterized protein LOC103495039 [Cucumis melo][more]
gi|659087166|ref|XP_008444307.1|1.6e-4760.12PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo][more]
gi|29423270|gb|AAO73521.1|6.0e-4252.15gag-pol polyprotein [Glycine max][more]
gi|29423279|gb|AAO73527.1|6.0e-4252.15gag-pol polyprotein [Glycine max][more]
gi|3777527|gb|AAC64917.1|8.6e-4150.54gag-pol polyprotein [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G30780.1CSPI01G30780.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 41..183
score: 9.2
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 41..183
score: 9.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 41..177
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G30780Wild cucumber (PI 183967)cpicpiB045
CSPI01G30780Cucumber (Gy14) v1cgycpiB166
CSPI01G30780Cucurbita maxima (Rimu)cmacpiB084
CSPI01G30780Cucurbita maxima (Rimu)cmacpiB058
CSPI01G30780Cucurbita maxima (Rimu)cmacpiB543
CSPI01G30780Cucurbita moschata (Rifu)cmocpiB050
CSPI01G30780Cucurbita moschata (Rifu)cmocpiB078
CSPI01G30780Cucurbita moschata (Rifu)cmocpiB534
CSPI01G30780Cucumber (Chinese Long) v2cpicuB001
CSPI01G30780Melon (DHL92) v3.5.1cpimeB042
CSPI01G30780Melon (DHL92) v3.5.1cpimeB071
CSPI01G30780Watermelon (Charleston Gray)cpiwcgB037
CSPI01G30780Watermelon (Charleston Gray)cpiwcgB049
CSPI01G30780Watermelon (97103) v1cpiwmB022
CSPI01G30780Watermelon (97103) v1cpiwmB076
CSPI01G30780Cucurbita pepo (Zucchini)cpecpiB268
CSPI01G30780Cucurbita pepo (Zucchini)cpecpiB350
CSPI01G30780Cucurbita pepo (Zucchini)cpecpiB655
CSPI01G30780Bottle gourd (USVL1VR-Ls)cpilsiB003
CSPI01G30780Bottle gourd (USVL1VR-Ls)cpilsiB059
CSPI01G30780Melon (DHL92) v3.6.1cpimedB036
CSPI01G30780Melon (DHL92) v3.6.1cpimedB064
CSPI01G30780Cucumber (Gy14) v2cgybcpiB002
CSPI01G30780Cucumber (Gy14) v2cgybcpiB251
CSPI01G30780Silver-seed gourdcarcpiB0462
CSPI01G30780Silver-seed gourdcarcpiB0558
CSPI01G30780Cucumber (Chinese Long) v3cpicucB000
CSPI01G30780Cucumber (Chinese Long) v3cpicucB056
CSPI01G30780Watermelon (97103) v2cpiwmbB028
CSPI01G30780Watermelon (97103) v2cpiwmbB043
CSPI01G30780Wax gourdcpiwgoB021
CSPI01G30780Wax gourdcpiwgoB100