CSPI01G19240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G19240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 14710029 .. 14710929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGACTTAGGTTTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAGTTTGGAATGGTTGATTGCAATGCCACAAAGTACCTGATGGAACCCAAGGCACAACTTCACAAAGACATGGAATGAGCATCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATTCGTTTTGGGCTCACTTATACGAAAGGTCCCAGAGAATTCAATATATTCGGTTACTCTGACAGTGATTTAGCCGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATAGAATTCGCAAAAGTAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGTGAGATAGCCGGAATGGAGCCAAAGTCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACATTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGTTGTTATGTGTCAGCTACTTGGTGTTCGTAACTTAGAATCATGTCAGGATTAG

mRNA sequence

ATGAGCGACTTAGGTTTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAGTTTGGAATGGTTGATTGCAATGCCACAAAATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCCGGTGATCTCGACGGGAGGAAAAGCACAACCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGTGAGATAGCCGGAATGGAGCCAAAGTCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACATTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGTTGTTATGTGTCAGCTACTTGGTGTTCGTAACTTAGAATCATGTCAGGATTAG

Coding sequence (CDS)

ATGAGCGACTTAGGTTTTCTCTCTTACTACTTAGGAATTGAAGTTGAACAACAGAAGGGTCGAATCCTGCTCAAACAACCAACTTATGCCAAAAGAATTTTGTCCCAGTTTGGAATGGTTGATTGCAATGCCACAAAATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCCGGTGATCTCGACGGGAGGAAAAGCACAACCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGTGAGATAGCCGGAATGGAGCCAAAGTCGGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACATTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGTTGTTATGTGTCAGCTACTTGGTGTTCGTAACTTAGAATCATGTCAGGATTAG
Homology
[Close]
BLAST of CSPI01G19240 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 79/287 (27.53%), Postives = 121/287 (42.16%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNATK-------------- 60
            M+DL  + +++GI +E Q+ +I L Q  Y K+ILS+F M +CNA                
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173

Query: 61   -----------------YLLKTRPDLSYVVGMASRYMERPTT---------MHY------ 120
                              +L TRPDL+  V + SRY  +  +         + Y      
Sbjct: 1174 DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTID 1233

Query: 121  -------------KVVKQILSDLAGDLDGRKSTT-------------------------- 180
                         K++  + SD AG    RKSTT                          
Sbjct: 1234 MKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASS 1293

Query: 181  ---EFIAATTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDT 200
               E++A   A  +ALWL+ L++ I       + ++ DN+  I++  NP  H R+KHID 
Sbjct: 1294 TEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDI 1353

[Close]
BLAST of CSPI01G19240 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 63/204 (30.88%), Postives = 103/204 (50.49%), Query Frame = 1 

Query: 51   TRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------------------------SDLA 110
            TRPD+++ VG+ SR++E P   H++ VK IL                         +D+A
Sbjct: 1125 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMA 1184

Query: 111  GDLDGRKSTT----------------------------EFIAATTAACQALWLRCLVSEI 170
            GD+D RKS+T                            E+IAAT    + +WL+  + E+
Sbjct: 1185 GDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244

Query: 171  AGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHFHFIRECVENGQIIVEFVNTREQR 202
             G+  K   ++ D++SAI L KN ++H R+KHID  +H+IRE V++  + V  ++T E  
Sbjct: 1245 -GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENP 1304

[Close]
BLAST of CSPI01G19240 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-61
Identity = 146/293 (49.83%), Postives = 165/293 (56.31%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
            MSDLG LSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T               
Sbjct: 1135 MSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDAD 1194

Query: 61   ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVV-------KQIL- 120
                            +YLL TRPDLSY VG+ASR+MERPTTMH K V       K  L 
Sbjct: 1195 GNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLD 1254

Query: 121  -------------------SDLAGDLDGRKST---------------------------- 180
                               SDLAGD+D R+ST                            
Sbjct: 1255 SGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCE 1314

Query: 181  TEFIAATTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             EF+AAT AAC ALWLR L+SE+ G E K V LFVDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 1315 AEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGRSKHIDTRY 1374

[Close]
BLAST of CSPI01G19240 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.4e-61
Identity = 146/293 (49.83%), Postives = 164/293 (55.97%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
            MSDLG LSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T               
Sbjct: 1135 MSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDAD 1194

Query: 61   ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVV-------KQIL- 120
                            +YLL TRPDLSY VG+ASR+MERPTTMH K V       K  L 
Sbjct: 1195 GNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLD 1254

Query: 121  -------------------SDLAGDLDGRKST---------------------------- 180
                               SDLAGD+D R+ST                            
Sbjct: 1255 SGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCE 1314

Query: 181  TEFIAATTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             EF+AAT AAC ALWLR L+SE+ G E K V LFVDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 1315 AEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGRSKHIDTRY 1374

[Close]
BLAST of CSPI01G19240 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.5e-60
Identity = 140/293 (47.78%), Postives = 168/293 (57.34%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNATK-------------- 60
            MSDLG L+YYLGIEV+Q +    LKQ  YAK++LSQFGM++CN+                
Sbjct: 1117 MSDLGLLTYYLGIEVDQDESATTLKQTAYAKKLLSQFGMMECNSVSIPIDPRSQLSKDPE 1176

Query: 61   -----------------YLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------- 120
                             YLL TRPDLSY VG+ASR+MERPT MH+K VKQIL        
Sbjct: 1177 GHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYIKGTMD 1236

Query: 121  -------------------SDLAGDLDGRKST------------------TEFIAATTAA 180
                               SDLAGDLD R+ST                   + +A ++  
Sbjct: 1237 YGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFYINQSLVAWSSQKQKTVALSSCE 1296

Query: 181  CQ----------ALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             +          ALWLR L++E+AG+E K+V LFVDN+SAIALMKNPVFHGRSKHIDT +
Sbjct: 1297 AEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNRSAIALMKNPVFHGRSKHIDTRY 1356

[Close]
BLAST of CSPI01G19240 vs. TrEMBL
Match: Q7XMW3_ORYSJ (OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=4 SV=2)

HSP 1 Score: 222.6 bits (566), Expect = 4.4e-55
Identity = 133/287 (46.34%), Postives = 159/287 (55.40%), Query Frame = 1 

Query: 1   MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
           MSDLG L+YYLGIEV Q    I +KQ  YA++IL+QFGM+DCN+T               
Sbjct: 57  MSDLGLLTYYLGIEVLQGTDGIAIKQAAYARKILTQFGMLDCNSTSIPIEHRSQLHKDAE 116

Query: 61  ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------- 120
                           +YLL TRPDLSY VG+ SR+MERPT MH+K +KQIL        
Sbjct: 117 GSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFMERPTVMHFKALKQILRYLKGTIN 176

Query: 121 -------------------SDLAGDLDGRKSTT------------------EFIAA---- 180
                              SDLAGD D  +ST+                  + +A     
Sbjct: 177 CGLMFSGGNGAVEITGFTDSDLAGDSDDSRSTSGMAFYFNGSLVSWSSQKQKTVALSSCE 236

Query: 181 ------TTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 202
                 T AAC ALWLR L+ E+ G E + V L+VDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 237 AEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPVFHGRSKHIDTRY 296

[Close]
BLAST of CSPI01G19240 vs. TrEMBL
Match: A0A0A9FJ50_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 127/293 (43.34%), Postives = 159/293 (54.27%), Query Frame = 1 

Query: 1   MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNATKYLLK---------- 60
           MSDLG LS+YLGIEV QQ+G + +KQ  YA+++L QFGM D N TKY ++          
Sbjct: 43  MSDLGLLSFYLGIEVSQQEGSVTIKQSAYARKVLKQFGMEDYNPTKYPMEHKAQVHKDSD 102

Query: 61  ---------------------TRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------- 120
                                TRPDLS+ VG+ASR+MERPT MH K+VKQ+L        
Sbjct: 103 GQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHMERPTVMHQKLVKQMLRYLKGTID 162

Query: 121 -------------------SDLAGDLDGRKST--------TEFIAATT--------AACQ 180
                              SDL GDLD RKST           ++ T+        ++C+
Sbjct: 163 LGLVYVQGTGKEVLTGFTDSDLGGDLDDRKSTGGMAFYLNNNLVSWTSQKQKTVALSSCE 222

Query: 181 AL------------WLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
           A             WL+ ++ E+ G +  SV L+VDN SAIALMKNPVFHGRSKHID  +
Sbjct: 223 AEFIAAATAACQALWLKSMLEELTGEKQGSVKLYVDNNSAIALMKNPVFHGRSKHIDMRY 282

[Close]
BLAST of CSPI01G19240 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 243.8 bits (621), Expect = 2.6e-61
Identity = 146/293 (49.83%), Postives = 165/293 (56.31%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
            MSDLG LSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T               
Sbjct: 1135 MSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDAD 1194

Query: 61   ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVV-------KQIL- 120
                            +YLL TRPDLSY VG+ASR+MERPTTMH K V       K  L 
Sbjct: 1195 GNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLD 1254

Query: 121  -------------------SDLAGDLDGRKST---------------------------- 180
                               SDLAGD+D R+ST                            
Sbjct: 1255 SGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCE 1314

Query: 181  TEFIAATTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             EF+AAT AAC ALWLR L+SE+ G E K V LFVDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 1315 AEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNKSAIALMKNPVFHGRSKHIDTRY 1374

[Close]
BLAST of CSPI01G19240 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 243.4 bits (620), Expect = 3.4e-61
Identity = 146/293 (49.83%), Postives = 164/293 (55.97%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
            MSDLG LSYYLGIEV Q +  I +KQ  YAK+ILSQFGM  CN T               
Sbjct: 1135 MSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKILSQFGMQGCNPTSIPMEPRSLLHKDAD 1194

Query: 61   ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVV-------KQIL- 120
                            +YLL TRPDLSY VG+ASR+MERPTTMH K V       K  L 
Sbjct: 1195 GNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTTMHLKAVKMILRYLKGTLD 1254

Query: 121  -------------------SDLAGDLDGRKST---------------------------- 180
                               SDLAGD+D R+ST                            
Sbjct: 1255 SGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFYVNSSLVSWCSQKQKTVALSSCE 1314

Query: 181  TEFIAATTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             EF+AAT AAC ALWLR L+SE+ G E K V LFVDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 1315 AEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNKSAIALMKNPVFHGRSKHIDTRY 1374

[Close]
BLAST of CSPI01G19240 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 239.2 bits (609), Expect = 6.5e-60
Identity = 140/293 (47.78%), Postives = 168/293 (57.34%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNATK-------------- 60
            MSDLG L+YYLGIEV+Q +    LKQ  YAK++LSQFGM++CN+                
Sbjct: 1117 MSDLGLLTYYLGIEVDQDESATTLKQTAYAKKLLSQFGMMECNSVSIPIDPRSQLSKDPE 1176

Query: 61   -----------------YLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------- 120
                             YLL TRPDLSY VG+ASR+MERPT MH+K VKQIL        
Sbjct: 1177 GHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYIKGTMD 1236

Query: 121  -------------------SDLAGDLDGRKST------------------TEFIAATTAA 180
                               SDLAGDLD R+ST                   + +A ++  
Sbjct: 1237 YGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFYINQSLVAWSSQKQKTVALSSCE 1296

Query: 181  CQ----------ALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 208
             +          ALWLR L++E+AG+E K+V LFVDN+SAIALMKNPVFHGRSKHIDT +
Sbjct: 1297 AEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNRSAIALMKNPVFHGRSKHIDTRY 1356

[Close]
BLAST of CSPI01G19240 vs. NCBI nr
Match: gi|38345657|emb|CAE04421.2| (OSJNBb0040D15.11 [Oryza sativa Japonica Group])

HSP 1 Score: 222.6 bits (566), Expect = 6.3e-55
Identity = 133/287 (46.34%), Postives = 159/287 (55.40%), Query Frame = 1 

Query: 1   MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNAT--------------- 60
           MSDLG L+YYLGIEV Q    I +KQ  YA++IL+QFGM+DCN+T               
Sbjct: 57  MSDLGLLTYYLGIEVLQGTDGIAIKQAAYARKILTQFGMLDCNSTSIPIEHRSQLHKDAE 116

Query: 61  ----------------KYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL-------- 120
                           +YLL TRPDLSY VG+ SR+MERPT MH+K +KQIL        
Sbjct: 117 GSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFMERPTVMHFKALKQILRYLKGTIN 176

Query: 121 -------------------SDLAGDLDGRKSTT------------------EFIAA---- 180
                              SDLAGD D  +ST+                  + +A     
Sbjct: 177 CGLMFSGGNGAVEITGFTDSDLAGDSDDSRSTSGMAFYFNGSLVSWSSQKQKTVALSSCE 236

Query: 181 ------TTAACQALWLRCLVSEIAGMEPKSVTLFVDNKSAIALMKNPVFHGRSKHIDTHF 202
                 T AAC ALWLR L+ E+ G E + V L+VDNKSAIALMKNPVFHGRSKHIDT +
Sbjct: 237 AEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPVFHGRSKHIDTRY 296

[Close]
BLAST of CSPI01G19240 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 121/256 (47.27%), Postives = 146/256 (57.03%), Query Frame = 1 

Query: 1    MSDLGFLSYYLGIEVEQQKGRILLKQPTYAKRILSQFGMVDCNATKYLLKTRPDLSYVVG 60
            MSDLG L+YYLGIE+ +      +  PT  +R++           +YLL TRPDLSY VG
Sbjct: 1090 MSDLGLLTYYLGIELHKDAQGSTV-DPTEYRRVIG--------CLRYLLHTRPDLSYAVG 1149

Query: 61   MASRYMERPTTMHYKVVKQIL---------------------------SDLAGDLDGRKS 120
            +ASR+MERPT MH+K VKQIL                           SDLAGD D R+S
Sbjct: 1150 VASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRS 1209

Query: 121  TT------------------EFIAA----------TTAACQALWLRCLVSEIAGMEPKSV 180
            T+                  + +A           T AAC ALWLR L+ E+ G E + V
Sbjct: 1210 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 1269

Query: 181  TLFVDNKSAIALMKNPVFHGRSKHIDTHFHFIRECVENGQIIVEFVNTREQRADVLTKAL 202
             L+VDNKSAIALMKNPVFHGRSKHIDT +HFIRECVE+G+I +EFV   EQRAD LTK L
Sbjct: 1270 KLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGL 1329

The following BLAST results are available for this feature:
BLAST of CSPI01G19240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPIA_DROME3.7e-2327.53Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
POLX_TOBAC1.6e-2130.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CSPI01G19240 vs. TrEMBL
Match NameE-valueIdentityDescription
B8BDZ6_ORYSI1.8e-6149.83Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4... [more]
Q0J8A6_ORYSJ2.4e-6149.83Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1[more]
Q10RM4_ORYSJ4.5e-6047.78Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q7XMW3_ORYSJ4.4e-5546.34OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=... [more]
A0A0A9FJ50_ARUDO1.2e-4943.34Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CSPI01G19240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G19240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|218201855|gb|EEC84282.1|2.6e-6149.83hypothetical protein OsI_30754 [Oryza sativa Indica Group][more]
gi|113622864|dbj|BAF22809.1|3.4e-6149.83Os08g0125300 [Oryza sativa Japonica Group][more]
gi|108706239|gb|ABF94034.1|6.5e-6047.78retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|38345657|emb|CAE04421.2|6.3e-5546.34OSJNBb0040D15.11 [Oryza sativa Japonica Group][more]
gi|29150404|gb|AAO72413.1|2.6e-4847.27gag-pol polyprotein [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G19240.1CSPI01G19240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..47
score: 4.1
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..124
score: 3.9
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 1..124
score: 3.9