Bhi11G000778 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000778
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	1-deoxy-D-xylulose-5-phosphate synthase
Location	chr11 : 27389517 .. 27390585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTCAGGATGTTGAAGAACTTGCAACAGAAGTTCGAGAAGAAATCGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAATTTGGGTACTGTTGAGCTCACTGTAGCATTGCATTATGTCTTCAATGCACCTCAAGGCAAGATCGTATGGAACGTTGGCCATCAGGTATACCTCAAAACAAATTATTAAACAACCTTACTTAACAAGTATTCATATGAATGCTCGAACTTTTGTAATGTCATTTTCGTTGGATATTTTATATATATATTTTTTTATTTTTTTTATTTAATTATATTAATTTACTGTTAAGTAAATGGGTTAGAATTGATCCGTTCCTCTTCTCTCTTTTAAAGCATTTTTATTTTAAAGTACGTGGAAAGAAGTTAGGTTTTTTTTTTTTTTTTTAATTGTTTTAGAGTGTGCTTGGAATACATTTAAGATGTTTAATTTAAAAAATAAGTCATGTTGGAAGAAATTGAAATATTTAACAATCACTCAAAATAACATTTTAAGTGTATTTTAATCCGTTTTTTTTTTATCAAAAGTGTTTAAATAAAAATGAGTTTTTTCTGAAATCAATCCAAATAGGCCTTAATCATCTTCATAAATGATAACGAATACAAATTTTACACATCAAAGGAACTTTTTGCATTTAAAATATTGATTCTCAAAAGCCTTTCGTGAGCATACAATTCAACAGACAACTTAGTTGCACACAAGTTATCTTGTATATTGGGGTGAAGCGTCAAAATACTTCGGGCAAGTTGGGGGCACGTCTCTCTAGACAACGTTCCAAAACACAATCCAACTCGAATTATAAGTTTTCTTATTGATATGGTCTCAAGTGAGATGAAATGGGAAAGTATTAAATTTATCGTAATTGGTCAACTTAATTAAGTATTTTGAGTTGGTTGATAATTTATCGATGATTAATTCCTAAATTCATCGATGTATGTTTAAATATAAAATTTGTTCTTGTTTTTGGGATCAGGCTTATGCTCATAAAATTCTTACGGGAAGGAAGTCTGGGGAACTCAGGTTTTCCAAGAAGGGATGA

mRNA sequence

ATGAGATTTCAGGATGTTGAAGAACTTGCAACAGAAGTTCGAGAAGAAATCGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAATTTGGGTACTGTTGAGCTCACTGTAGCATTGCATTATGTCTTCAATGCACCTCAAGGCAAGATCGTATGGAACGTTGGCCATCAGGCTTATGCTCATAAAATTCTTACGGGAAGGAAGTCTGGGGAACTCAGGTTTTCCAAGAAGGGATGA

Coding sequence (CDS)

ATGAGATTTCAGGATGTTGAAGAACTTGCAACAGAAGTTCGAGAAGAAATCGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTCAAATTTGGGTACTGTTGAGCTCACTGTAGCATTGCATTATGTCTTCAATGCACCTCAAGGCAAGATCGTATGGAACGTTGGCCATCAGGCTTATGCTCATAAAATTCTTACGGGAAGGAAGTCTGGGGAACTCAGGTTTTCCAAGAAGGGATGA

Protein sequence

MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAHKILTGRKSGELRFSKKG

Homology

[Close]

BLAST of Bhi11G000778 vs. TAIR10
Match: AT4G15560.1 (Deoxyxylulose-5-phosphate synthase)

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-23
Identity = 42/67 (62.69%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 4   QDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAH 63
           +++++L+ E+R +++++VSK+GGHLGS+LG VELTVALHY+FN PQ KI+W+VGHQ+Y H
Sbjct: 92  KELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPH 151

Query: 64  KILTGRK 71
           KILTGR+
Sbjct: 152 KILTGRR 158

[Close]

BLAST of Bhi11G000778 vs. TAIR10
Match: AT3G21500.2 (1-deoxy-D-xylulose 5-phosphate synthase 1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-22
Identity = 42/70 (60.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  ++++ L+ E+R +++++VSK+GGHLGSNLG VELTVALHY+FN P  KI+W+VGHQ+
Sbjct: 79  LSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQS 138

Query: 61  YAHKILTGRK 71
           Y HKILTGR+
Sbjct: 139 YPHKILTGRR 148

[Close]

BLAST of Bhi11G000778 vs. TAIR10
Match: AT5G11380.1 (1-deoxy-D-xylulose 5-phosphate synthase 3)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-09
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 4   QDVEELATEVREEIVYSV--SKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAY 63
           ++++ LA E+R E+ +SV   K+   +  +   +ELT+ALHYVF AP   I+W+   Q Y
Sbjct: 93  KELKLLADEIRTEL-HSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTY 152

Query: 64  AHKILTGRKS 72
           AHK+LT R S
Sbjct: 153 AHKVLTRRWS 161

[Close]

BLAST of Bhi11G000778 vs. Swiss-Prot
Match: sp|O22567|DXS1_ORYSJ (1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLA1 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 4.7e-22
Identity = 44/70 (62.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  +++++LA E+R ++++ VSK+GGHLGS+LG VELTVALHYVFN PQ KI+W+VGHQ+
Sbjct: 85  LSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVELTVALHYVFNTPQDKILWDVGHQS 144

Query: 61  YAHKILTGRK 71
           Y HKILTGR+
Sbjct: 145 YPHKILTGRR 154

[Close]

BLAST of Bhi11G000778 vs. Swiss-Prot
Match: sp|O78328|DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=TKT2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.0e-22
Identity = 44/70 (62.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  +++++LA E+R + +++VSK+GGHLGS+LG VELTVALHYVFNAPQ +I+W+VGHQ+
Sbjct: 88  LSLKELKQLADELRSDTIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQS 147

Query: 61  YAHKILTGRK 71
           Y HKILTGR+
Sbjct: 148 YPHKILTGRR 157

[Close]

BLAST of Bhi11G000778 vs. Swiss-Prot
Match: sp|Q38854|DXS_ARATH (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DXS PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 42/67 (62.69%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 4   QDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAH 63
           +++++L+ E+R +++++VSK+GGHLGS+LG VELTVALHY+FN PQ KI+W+VGHQ+Y H
Sbjct: 92  KELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELTVALHYIFNTPQDKILWDVGHQSYPH 151

Query: 64  KILTGRK 71
           KILTGR+
Sbjct: 152 KILTGRR 158

[Close]

BLAST of Bhi11G000778 vs. Swiss-Prot
Match: sp|Q6YU51|DXS2_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190000 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 45/67 (67.16%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 5   DVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAHK 64
           ++E+LA E+R EIV++VSK+GGHL S+LG VEL VALH+VF+ P+ KI+W+VGHQAY HK
Sbjct: 87  ELEQLAAELRAEIVHTVSKTGGHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQAYPHK 146

Query: 65  ILTGRKS 72
           ILTGR+S
Sbjct: 147 ILTGRRS 153

[Close]

BLAST of Bhi11G000778 vs. Swiss-Prot
Match: sp|Q2YCH7|DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) OX=323848 GN=dxs PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 8  ELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAHKILT 67
          +LA E+R+ +V SV+K+GGHL SNLGTVELT+ALHYVFN P  ++VW+VGHQ Y HKILT
Sbjct: 24 QLADELRQFLVESVAKTGGHLSSNLGTVELTIALHYVFNTPYDRLVWDVGHQTYVHKILT 83

Query: 68 GRKSGELRFSKKG 81
          GR+ G  +   +G
Sbjct: 84 GRREGMSKLRMRG 96

[Close]

BLAST of Bhi11G000778 vs. TrEMBL
Match: tr|A0A1S3BPP1|A0A1S3BPP1_CUCME (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491852 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  QDVEELA E+REE+VYSVSKSGGHLGSNLGTVELTVALHYVF+APQ KIVW+VGHQA
Sbjct: 88  LSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQA 147

Query: 61  YAHKILTGRKSGELRFSKKG 81
           YAHKILTGR+S      K G
Sbjct: 148 YAHKILTGRRSRMQTVRKAG 167

[Close]

BLAST of Bhi11G000778 vs. TrEMBL
Match: tr|V7CBR9|V7CBR9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G148900g PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  Q++EELA E+REEIVYSVSK+GGHL S+LG  ELTVALH+VFN PQ KI+W+VGHQ 
Sbjct: 99  LSIQELEELADELREEIVYSVSKTGGHLSSSLGVAELTVALHHVFNTPQDKIIWDVGHQT 158

Query: 61  YAHKILTGRKS 72
           YAHKILTGR+S
Sbjct: 159 YAHKILTGRRS 169

[Close]

BLAST of Bhi11G000778 vs. TrEMBL
Match: tr|S8CJK6|S8CJK6_9LAMI (1-deoxyxylulose-5-phosphate synthase OS=Genlisea aurea OX=192259 GN=M569_09944 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  QD+E+LA EVRE+IVYSVSK+GGHL S+LG  ELTVALH+VFN+P+ KI+W+VGHQA
Sbjct: 100 LSLQDMEKLAEEVREDIVYSVSKTGGHLSSSLGVAELTVALHHVFNSPEDKIIWDVGHQA 159

Query: 61  YAHKILTGRKS 72
           Y HKILTGR+S
Sbjct: 160 YGHKILTGRRS 170

[Close]

BLAST of Bhi11G000778 vs. TrEMBL
Match: tr|A0A1S3UWQ2|A0A1S3UWQ2_VIGRR (probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106769383 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  Q++EELA E+REEIVY+VSK+GGHL S+LG  ELTVALH+VFN PQ KI+W+VGHQ 
Sbjct: 98  LSIQELEELADELREEIVYTVSKTGGHLSSSLGVAELTVALHHVFNTPQDKIIWDVGHQT 157

Query: 61  YAHKILTGRKS 72
           YAHKILTGR+S
Sbjct: 158 YAHKILTGRRS 168

[Close]

BLAST of Bhi11G000778 vs. TrEMBL
Match: tr|A0A1U8EX77|A0A1U8EX77_CAPAN (LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107850768 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-22
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 5   DVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAHK 64
           D+E+LA E+R EIVYSVSK+GGHL S+LG V+LTVALH+VFNAP+ KI+W+VGHQAYAHK
Sbjct: 88  DLEQLAAELRAEIVYSVSKTGGHLSSSLGVVDLTVALHHVFNAPEDKIIWDVGHQAYAHK 147

Query: 65  ILTGRKS 72
           ILTGR+S
Sbjct: 148 ILTGRRS 154

[Close]

BLAST of Bhi11G000778 vs. NCBI nr
Match: XP_008450191.1 (PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  QDVEELA E+REE+VYSVSKSGGHLGSNLGTVELTVALHYVF+APQ KIVW+VGHQA
Sbjct: 88  LSLQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQA 147

Query: 61  YAHKILTGRKSGELRFSKKG 81
           YAHKILTGR+S      K G
Sbjct: 148 YAHKILTGRRSRMQTVRKAG 167

[Close]

BLAST of Bhi11G000778 vs. NCBI nr
Match: XP_007154799.1 (hypothetical protein PHAVU_003G148900g [Phaseolus vulgaris] >ESW26793.1 hypothetical protein PHAVU_003G148900g [Phaseolus vulgaris])

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  Q++EELA E+REEIVYSVSK+GGHL S+LG  ELTVALH+VFN PQ KI+W+VGHQ 
Sbjct: 99  LSIQELEELADELREEIVYSVSKTGGHLSSSLGVAELTVALHHVFNTPQDKIIWDVGHQT 158

Query: 61  YAHKILTGRKS 72
           YAHKILTGR+S
Sbjct: 159 YAHKILTGRRS 169

[Close]

BLAST of Bhi11G000778 vs. NCBI nr
Match: EPS64831.1 (1-deoxyxylulose-5-phosphate synthase [Genlisea aurea])

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-22
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  QD+E+LA EVRE+IVYSVSK+GGHL S+LG  ELTVALH+VFN+P+ KI+W+VGHQA
Sbjct: 100 LSLQDMEKLAEEVREDIVYSVSKTGGHLSSSLGVAELTVALHHVFNSPEDKIIWDVGHQA 159

Query: 61  YAHKILTGRKS 72
           Y HKILTGR+S
Sbjct: 160 YGHKILTGRRS 170

[Close]

BLAST of Bhi11G000778 vs. NCBI nr
Match: XP_014510475.1 (1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MRFQDVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQA 60
           +  Q++EELA E+REEIVY+VSK+GGHL S+LG  ELTVALH+VFN PQ KI+W+VGHQ 
Sbjct: 98  LSIQELEELADELREEIVYTVSKTGGHLSSSLGVAELTVALHHVFNTPQDKIIWDVGHQT 157

Query: 61  YAHKILTGRKS 72
           YAHKILTGR+S
Sbjct: 158 YAHKILTGRRS 168

[Close]

BLAST of Bhi11G000778 vs. NCBI nr
Match: XP_016551001.1 (PREDICTED: LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Capsicum annuum])

HSP 1 Score: 112.8 bits (281), Expect = 5.2e-22
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 5   DVEELATEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQGKIVWNVGHQAYAHK 64
           D+E+LA E+R EIVYSVSK+GGHL S+LG V+LTVALH+VFNAP+ KI+W+VGHQAYAHK
Sbjct: 88  DLEQLAAELRAEIVYSVSKTGGHLSSSLGVVDLTVALHHVFNAPEDKIIWDVGHQAYAHK 147

Query: 65  ILTGRKS 72
           ILTGR+S
Sbjct: 148 ILTGRRS 154

The following BLAST results are available for this feature:

BLAST of Bhi11G000778 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15560.1	7.5e-23	62.69	Deoxyxylulose-5-phosphate synthase	[more]
AT3G21500.2	1.7e-22	60.00	1-deoxy-D-xylulose 5-phosphate synthase 1	[more]
AT5G11380.1	6.2e-09	42.86	1-deoxy-D-xylulose 5-phosphate synthase 3	[more]

BLAST of Bhi11G000778 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22567\|DXS1_ORYSJ	4.7e-22	62.86	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
sp\|O78328\|DXS_CAPAN	8.0e-22	62.86	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annu...	[more]
sp\|Q38854\|DXS_ARATH	1.4e-21	62.69	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q6YU51\|DXS2_ORYSJ	3.0e-21	67.16	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativ...	[more]
sp\|Q2YCH7\|DXS_NITMU	3.0e-21	61.64	1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC...	[more]

BLAST of Bhi11G000778 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPP1\|A0A1S3BPP1_CUCME	2.1e-27	78.75	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cucumis mel...	[more]
tr\|V7CBR9\|V7CBR9_PHAVU	1.2e-22	73.24	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G148900g PE=3 ...	[more]
tr\|S8CJK6\|S8CJK6_9LAMI	2.0e-22	71.83	1-deoxyxylulose-5-phosphate synthase OS=Genlisea aurea OX=192259 GN=M569_09944 P...	[more]
tr\|A0A1S3UWQ2\|A0A1S3UWQ2_VIGRR	2.7e-22	71.83	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Vigna radia...	[more]
tr\|A0A1U8EX77\|A0A1U8EX77_CAPAN	3.5e-22	76.12	LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chlorop...	[more]

BLAST of Bhi11G000778 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450191.1	3.2e-27	78.75	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cu...	[more]
XP_007154799.1	1.8e-22	73.24	hypothetical protein PHAVU_003G148900g [Phaseolus vulgaris] >ESW26793.1 hypothet...	[more]
EPS64831.1	3.1e-22	71.83	1-deoxyxylulose-5-phosphate synthase [Genlisea aurea]	[more]
XP_014510475.1	4.0e-22	71.83	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [Vigna radiata var. radia...	[more]
XP_016551001.1	5.2e-22	76.12	PREDICTED: LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016114	terpenoid biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR029061	THDP-binding
IPR005477	Dxylulose-5-P_synthase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016114	terpenoid biosynthetic process
molecular_function	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000778	Bhi11M000778	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005477	Deoxyxylulose-5-phosphate synthase	PFAM	PF13292	DXP_synthase_N	coord: 4..71 e-value: 7.5E-33 score: 113.8
IPR005477	Deoxyxylulose-5-phosphate synthase	PANTHER	PTHR43322	FAMILY NOT NAMED	coord: 4..71
None	No IPR available	GENE3D	G3DSA:3.40.50.970		coord: 1..80 e-value: 7.3E-25 score: 89.6
None	No IPR available	PANTHER	PTHR43322:SF6	1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE	coord: 4..71
IPR029061	Thiamin diphosphate-binding fold	SUPERFAMILY	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)	coord: 4..71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000778	Cucumber (Gy14) v1	cgywgoB503
Bhi11G000778	Cucumber (Gy14) v2	cgybwgoB229
Bhi11G000778	Cucurbita maxima (Rimu)	cmawgoB0411
Bhi11G000778	Cucurbita maxima (Rimu)	cmawgoB0815
Bhi11G000778	Cucurbita maxima (Rimu)	cmawgoB0822
Bhi11G000778	Cucurbita moschata (Rifu)	cmowgoB0407
Bhi11G000778	Cucurbita moschata (Rifu)	cmowgoB0811
Bhi11G000778	Cucurbita pepo (Zucchini)	cpewgoB0267
Bhi11G000778	Cucurbita pepo (Zucchini)	cpewgoB0478
Bhi11G000778	Cucurbita pepo (Zucchini)	cpewgoB0486
Bhi11G000778	Wild cucumber (PI 183967)	cpiwgoB241
Bhi11G000778	Cucumber (Chinese Long) v3	cucwgoB244
Bhi11G000778	Cucumber (Chinese Long) v2	cuwgoB239
Bhi11G000778	Bottle gourd (USVL1VR-Ls)	lsiwgoB412
Bhi11G000778	Melon (DHL92) v3.6.1	medwgoB511
Bhi11G000778	Melon (DHL92) v3.5.1	mewgoB500
Bhi11G000778	Watermelon (Charleston Gray)	wcgwgoB098
Bhi11G000778	Watermelon (97103) v2	wgowmbB020
Bhi11G000778	Watermelon (97103) v1	wgowmB017
Bhi11G000778	Silver-seed gourd	carwgoB1084
Bhi11G000778	Silver-seed gourd	carwgoB1191