Bhi11G000025 (gene) Wax gourd

Overview
NameBhi11G000025
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionglycine-rich cell wall structural protein 1.8-like
Locationchr11 : 729690 .. 730463 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATACATTCTAGGCATTCCTATCCATATGGCTACCACTAGAGTTTTGTGCTTTGGCTTTCTTGTCTTTGTATGTTTCGGCTTAGCTTCGGCTGCTAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTACTCCAAGAGTAGGGTATGATCCTAGCCATCGTGATGGATCCTATGATAATGCATATGGTAGAAGCTCTGGTAGAGGATATGGAATTGGAGATTCTGCTCTTGGAGGTTCCGGACAATATGAAGGTGATAGAGGACATGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATACGGAGGTATAGAAGGACATGGTAATGGTTATGGTAGAAATGGTGGTGGAAGCTACGAAAATCGTGATGGCCCTTCCCTTGGAGGTTCAGGATATGGAAGTGGCGATGGATATGACCAAGGAAGAGATCATGGCGTAGGTTATGGAAGTAGAGGAGGTGCTGACTCTAGCAATGGCTATGGAGATTCACGTGGATATCAAGCACGTGATAATGGCTATGGAGCACATGACAATGTGTATGGGAGTGGTGGAGGAGCTGGTGGTGGCTATGGAGTAGGAGGCCATGGTGGTGGTATTGGAAGTGGTGGTTATGGCAATGGAGGAGTGCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGGAGGCTATGATGGTGGATATGCTGTCAAAAGCTCTATATCAAATACGAATTGA

mRNA sequence

ATGGATGGATACATTCTAGGCATTCCTATCCATATGGCTACCACTAGAGTTTTGTGCTTTGGCTTTCTTGTCTTTGTATGTTTCGGCTTAGCTTCGGCTGCTAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTACTCCAAGAGTAGGGTATGATCCTAGCCATCGTGATGGATCCTATGATAATGCATATGGTAGAAGCTCTGGTAGAGGATATGGAATTGGAGATTCTGCTCTTGGAGGTTCCGGACAATATGAAGGTGATAGAGGACATGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATACGGAGGTATAGAAGGACATGGTAATGGTTATGGTAGAAATGGTGGTGGAAGCTACGAAAATCGTGATGGCCCTTCCCTTGGAGGTTCAGGATATGGAAGTGGCGATGGATATGACCAAGGAAGAGATCATGGCGTAGGTTATGGAAGTAGAGGAGGTGCTGACTCTAGCAATGGCTATGGAGATTCACGTGGATATCAAGCACGTGATAATGGCTATGGAGCACATGACAATGTGTATGGGAGTGGTGGAGGAGCTGGTGGTGGCTATGGAGTAGGAGGCCATGGTGGTGGTATTGGAAGTGGTGGTTATGGCAATGGAGGAGTGCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGGAGGCTATGATGGTGGATATGCTGTCAAAAGCTCTATATCAAATACGAATTGA

Coding sequence (CDS)

ATGGATGGATACATTCTAGGCATTCCTATCCATATGGCTACCACTAGAGTTTTGTGCTTTGGCTTTCTTGTCTTTGTATGTTTCGGCTTAGCTTCGGCTGCTAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTACTCCAAGAGTAGGGTATGATCCTAGCCATCGTGATGGATCCTATGATAATGCATATGGTAGAAGCTCTGGTAGAGGATATGGAATTGGAGATTCTGCTCTTGGAGGTTCCGGACAATATGAAGGTGATAGAGGACATGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGATACGGAGGTATAGAAGGACATGGTAATGGTTATGGTAGAAATGGTGGTGGAAGCTACGAAAATCGTGATGGCCCTTCCCTTGGAGGTTCAGGATATGGAAGTGGCGATGGATATGACCAAGGAAGAGATCATGGCGTAGGTTATGGAAGTAGAGGAGGTGCTGACTCTAGCAATGGCTATGGAGATTCACGTGGATATCAAGCACGTGATAATGGCTATGGAGCACATGACAATGTGTATGGGAGTGGTGGAGGAGCTGGTGGTGGCTATGGAGTAGGAGGCCATGGTGGTGGTATTGGAAGTGGTGGTTATGGCAATGGAGGAGTGCATGGAGGAGAATATGATAATAACAAAGGAAGTGGAGAAGGAGGCTATGATGGTGGATATGCTGTCAAAAGCTCTATATCAAATACGAATTGA

Protein sequence

MDGYILGIPIHMATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAYGRSSGRGYGIGDSALGGSGQYEGDRGHDSGYGGRNDDRGVGYGNGGGYGGIEGHGNGYGRNGGGSYENRDGPSLGGSGYGSGDGYDQGRDHGVGYGSRGGADSSNGYGDSRGYQARDNGYGAHDNVYGSGGGAGGGYGVGGHGGGIGSGGYGNGGVHGGEYDNNKGSGEGGYDGGYAVKSSISNTN
Homology
[Close]
BLAST of Bhi11G000025 vs. TrEMBL
Match: tr|A0A0A0L190|A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA +RVLC GFL+FV  GLASA RTLLDYDPR R YDYDRPTPRVGYDPSHRD SYDN Y
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 72 GRSSGRGYGIGDSALG 88
          G SS RGYG GDSALG
Sbjct: 61 GGSSSRGYGAGDSALG 76

[Close]
BLAST of Bhi11G000025 vs. TrEMBL
Match: tr|A0A1S3BMC4|A0A1S3BMC4_CUCME (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.3e-24
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA  R LC  FL+FV  GLASA RTLLDYDPRTRHY YDRP+PRVGYDP HRD SYDNAY
Sbjct: 1  MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 72 GRSSGRGYGIGDSAL 87
          G SS RG+GIGDSAL
Sbjct: 61 GGSSSRGHGIGDSAL 75

[Close]
BLAST of Bhi11G000025 vs. TrEMBL
Match: tr|A0A1S3BL53|A0A1S3BL53_CUCME (glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490776 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA  R L   FL+ V  GLASAARTLLDYDPRTR+Y YDRPTPRVGYDPSHRD SYDN Y
Sbjct: 1  MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 72 GRSSGRGYGIGDSALGGSGQYEGDR 97
          G SS +G+GIGDSALGGS ++EG R
Sbjct: 61 GGSSSKGHGIGDSALGGS-EHEGGR 84

[Close]
BLAST of Bhi11G000025 vs. TrEMBL
Match: tr|A0A1S3BM26|A0A1S3BM26_CUCME (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.1e-16
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA +R LC  FL+FVC GLASAARTLLDYDPRTR Y                      AY
Sbjct: 1  MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYXXXXXXXXXXXXXXXXXXXXXXAY 60

Query: 72 GRSSGRGYGIGDSALGGSGQYEGDRGH 99
          G SS RGYG+GDSALGGSG+YEG  GH
Sbjct: 61 GGSSNRGYGVGDSALGGSGRYEGGGGH 87

[Close]
BLAST of Bhi11G000025 vs. TrEMBL
Match: tr|A0A0A0L6H2|A0A0A0L6H2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010060 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA +RVLC GFL+FV  GLASA RTLLDYDPR R Y                     NAY
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYXXXXXXXXXXXXXXXXXXXXXNAY 60

Query: 72 GRSSGRGYGIGDSALGGSGQYEGDRGH 99
            SS +GYGIGDS LGGSG+Y G +GH
Sbjct: 61 SGSSSKGYGIGDSTLGGSGRYGGGKGH 87

[Close]
BLAST of Bhi11G000025 vs. NCBI nr
Match: KGN55750.1 (hypothetical protein Csa_3G010050 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA +RVLC GFL+FV  GLASA RTLLDYDPR R YDYDRPTPRVGYDPSHRD SYDN Y
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 72 GRSSGRGYGIGDSALG 88
          G SS RGYG GDSALG
Sbjct: 61 GGSSSRGYGAGDSALG 76

[Close]
BLAST of Bhi11G000025 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 8.1e-24
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA  R LC  FL+FV  GLASA RTLLDYDPRTRHY YDRP+PRVGYDP HRD SYDNAY
Sbjct: 1  MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 72 GRSSGRGYGIGDSAL 87
          G SS RG+GIGDSAL
Sbjct: 61 GGSSSRGHGIGDSAL 75

[Close]
BLAST of Bhi11G000025 vs. NCBI nr
Match: XP_008448676.1 (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo] >XP_008448677.1 PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA  R L   FL+ V  GLASAARTLLDYDPRTR+Y YDRPTPRVGYDPSHRD SYDN Y
Sbjct: 1  MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 72 GRSSGRGYGIGDSALGGSGQYEGDR 97
          G SS +G+GIGDSALGGS ++EG R
Sbjct: 61 GGSSSKGHGIGDSALGGS-EHEGGR 84

[Close]
BLAST of Bhi11G000025 vs. NCBI nr
Match: XP_023007610.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-16
Identity = 47/69 (68.12%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA TR  C  FL+ V  GL SAARTLLDYDPRTRHY Y+RP PR GYD  HRD SYDN Y
Sbjct: 1  MAITRAFCLSFLLLVGLGLTSAARTLLDYDPRTRHYGYNRPNPREGYDSGHRDESYDNVY 60

Query: 72 GRSSGRGYG 81
          G  SG  YG
Sbjct: 61 GGRSGGEYG 69

[Close]
BLAST of Bhi11G000025 vs. NCBI nr
Match: XP_008449164.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 12 MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71
          MA +R LC  FL+FVC GLASAARTLLDYDPRTR Y                      AY
Sbjct: 1  MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYXXXXXXXXXXXXXXXXXXXXXXAY 60

Query: 72 GRSSGRGYGIGDSALGGSGQYEGDRGH 99
          G SS RGYG+GDSALGGSG+YEG  GH
Sbjct: 61 GGSSNRGYGVGDSALGGSGRYEGGGGH 87

The following BLAST results are available for this feature:
BLAST of Bhi11G000025 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi11G000025 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi11G000025 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L190|A0A0A0L190_CUCSA1.3e-2581.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010050 PE=4 SV=1[more]
tr|A0A1S3BMC4|A0A1S3BMC4_CUCME5.3e-2478.67glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S3BL53|A0A1S3BL53_CUCME1.2e-2374.12glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3... [more]
tr|A0A1S3BM26|A0A1S3BM26_CUCME9.1e-1658.62glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0L6H2|A0A0A0L6H2_CUCSA1.5e-1355.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G010060 PE=4 SV=1[more]
BLAST of Bhi11G000025 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55750.11.9e-2581.58hypothetical protein Csa_3G010050 [Cucumis sativus][more]
XP_008449165.18.1e-2478.67PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo][more]
XP_008448676.11.8e-2374.12PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ... [more]
XP_023007610.13.6e-1668.12glycine-rich cell wall structural protein 2-like [Cucurbita maxima][more]
XP_008449164.11.4e-1558.62PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000025Bhi11M000025mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..257

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi11G000025Silver-seed gourdcarwgoB0670