Bhi10G000989 (gene) Wax gourd

Overview
NameBhi10G000989
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptiontranscription termination factor MTERF6, chloroplastic/mitochondrial-like
Locationchr10 : 29760934 .. 29761254 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGATCAATCCCAGGCTTATTAGCTACAGTATTGTCCCAAGGCTTACTGTGATTCTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATGAAAGGCTACATCCTACATTAGAGTTTCTGAAATCTATAGGTTTGAAGGACGTAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAGGTTTTACGTAGGGATGCTGACAAAGTTTTGAGACTTTGTTTTGATTTCCTGAAGAACTGTGGTTTTCGAGATCCCAGGTAG

mRNA sequence

ATGATTTTGATCAATCCCAGGCTTATTAGCTACAGTATTGTCCCAAGGCTTACTGTGATTCTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATGAAAGGCTACATCCTACATTAGAGTTTCTGAAATCTATAGGTTTGAAGGACGTAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAGGTTTTACGTAGGGATGCTGACAAAGTTTTGAGACTTTGTTTTGATTTCCTGAAGAACTGTGGTTTTCGAGATCCCAGGTAG

Coding sequence (CDS)

ATGATTTTGATCAATCCCAGGCTTATTAGCTACAGTATTGTCCCAAGGCTTACTGTGATTCTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATGAAAGGCTACATCCTACATTAGAGTTTCTGAAATCTATAGGTTTGAAGGACGTAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAGGTTTTACGTAGGGATGCTGACAAAGTTTTGAGACTTTGTTTTGATTTCCTGAAGAACTGTGGTTTTCGAGATCCCAGGTAG

Protein sequence

MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVLVKYPFLMGYSVDERLHPTLEFLKSIGLKDVDLQAVAVGYPEVLRRDADKVLRLCFDFLKNCGFRDPR
Homology
[Close]
BLAST of Bhi10G000989 vs. TrEMBL
Match: tr|A0A1S3BK85|A0A1S3BK85_CUCME (transcription termination factor MTERF6, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103490602 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.2e-11
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 1  MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVLVKYXXXXXXXXXXXXXXXXXX 60
          MIL+NPRLISY+IVP+LT I+DF ASFGLDK+G+IGKVLVKY                  
Sbjct: 1  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLRPTLEF 60

Query: 61 XXXXXXKDVDLQAVAVG 78
                 D+ LQA+AVG
Sbjct: 61 LKSIGLTDIGLQAIAVG 77

[Close]
BLAST of Bhi10G000989 vs. TrEMBL
Match: tr|A0A0A0KE07|A0A0A0KE07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 1   MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVLVKYXXXXXXXXXXXXXXXXXX 60
           MIL+NPRLI YSIVP+LT I+DF A+FGLDK+G+I KVLVKY                  
Sbjct: 54  MILLNPRLIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKF 113

Query: 61  XXXXXXKDVDLQAVA 76
                 KDVDLQA+A
Sbjct: 114 FKSIGLKDVDLQAIA 128

[Close]
BLAST of Bhi10G000989 vs. NCBI nr
Match: XP_008448401.1 (PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 9.4e-11
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 1  MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVLVKYXXXXXXXXXXXXXXXXXX 60
          MIL+NPRLISY+IVP+LT I+DF ASFGLDK+G+IGKVLVKY                  
Sbjct: 1  MILLNPRLISYNIVPKLTEIVDFRASFGLDKQGLIGKVLVKYPYLTGYNFDKMLRPTLEF 60

Query: 61 XXXXXXKDVDLQAVAVG 78
                 D+ LQA+AVG
Sbjct: 61 LKSIGLTDIGLQAIAVG 77

[Close]
BLAST of Bhi10G000989 vs. NCBI nr
Match: KGN46637.1 (hypothetical protein Csa_6G117190 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-10
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 1   MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVLVKYXXXXXXXXXXXXXXXXXX 60
           MIL+NPRLI YSIVP+LT I+DF A+FGLDK+G+I KVLVKY                  
Sbjct: 54  MILLNPRLIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSVDKTLRPTLKF 113

Query: 61  XXXXXXKDVDLQAVA 76
                 KDVDLQA+A
Sbjct: 114 FKSIGLKDVDLQAIA 128

[Close]
BLAST of Bhi10G000989 vs. NCBI nr
Match: KHN48282.1 (hypothetical protein glysoja_007951 [Glycine soja])

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MILINPRLISYSIVPRLTVILDFLASFGLDKEGMIGKVL 40
          MIL+NPRLISYSI  +LT I++FL + GL K+GMIGKV+
Sbjct: 1  MILLNPRLISYSIETKLTEIVNFLVNLGLSKDGMIGKVI 39

The following BLAST results are available for this feature:
BLAST of Bhi10G000989 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi10G000989 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi10G000989 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BK85|A0A1S3BK85_CUCME6.2e-1153.25transcription termination factor MTERF6, chloroplastic/mitochondrial-like OS=Cuc... [more]
tr|A0A0A0KE07|A0A0A0KE07_CUCSA5.3e-1053.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117190 PE=4 SV=1[more]
BLAST of Bhi10G000989 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008448401.19.4e-1153.25PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial-... [more]
KGN46637.18.0e-1053.33hypothetical protein Csa_6G117190 [Cucumis sativus][more]
KHN48282.15.0e-0466.67hypothetical protein glysoja_007951 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi10M000989Bhi10M000989mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 1..30
e-value: 500.0
score: 6.2
coord: 72..103
e-value: 1.2
score: 18.1
coord: 36..67
e-value: 7.1E-7
score: 38.8
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 10..102
e-value: 2.0E-11
score: 43.4
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 1..105
e-value: 3.1E-16
score: 61.3
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 1..104
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..104

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi10G000989Csa6G117190Cucumber (Chinese Long) v2cuwgoB601
Bhi10G000989Csa7G029940Cucumber (Chinese Long) v2cuwgoB685
Bhi10G000989ClCG02G010730Watermelon (Charleston Gray)wcgwgoB287
Bhi10G000989CSPI06G09530Wild cucumber (PI 183967)cpiwgoB606
Bhi10G000989CSPI07G02370Wild cucumber (PI 183967)cpiwgoB697
Bhi10G000989Cucsa.120010Cucumber (Gy14) v1cgywgoB216
Bhi10G000989Lsi10G000150Bottle gourd (USVL1VR-Ls)lsiwgoB069
Bhi10G000989Cp4.1LG15g06740Cucurbita pepo (Zucchini)cpewgoB0336
Bhi10G000989CsGy6G009620Cucumber (Gy14) v2cgybwgoB573
Bhi10G000989Carg04122Silver-seed gourdcarwgoB0252
Bhi10G000989CsaV3_6G009960Cucumber (Chinese Long) v3cucwgoB623
Bhi10G000989Cla015718Watermelon (97103) v1wgowmB395
Bhi10G000989Cla97C02G029690Watermelon (97103) v2wgowmbB367
Bhi10G000989Cla97C02G036580Watermelon (97103) v2wgowmbB358
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi10G000989Wax gourdwgowgoB007
Bhi10G000989Wax gourdwgowgoB070
Bhi10G000989Cucumber (Gy14) v1cgywgoB017
Bhi10G000989Cucumber (Gy14) v1cgywgoB211
Bhi10G000989Cucumber (Gy14) v2cgybwgoB311
Bhi10G000989Cucumber (Gy14) v2cgybwgoB650
Bhi10G000989Cucurbita maxima (Rimu)cmawgoB0665
Bhi10G000989Cucurbita maxima (Rimu)cmawgoB0695
Bhi10G000989Cucurbita moschata (Rifu)cmowgoB0663
Bhi10G000989Cucurbita moschata (Rifu)cmowgoB0688
Bhi10G000989Cucurbita pepo (Zucchini)cpewgoB0355
Bhi10G000989Wild cucumber (PI 183967)cpiwgoB324
Bhi10G000989Wild cucumber (PI 183967)cpiwgoB691
Bhi10G000989Cucumber (Chinese Long) v3cucwgoB328
Bhi10G000989Cucumber (Chinese Long) v3cucwgoB703
Bhi10G000989Cucumber (Chinese Long) v2cuwgoB321
Bhi10G000989Cucumber (Chinese Long) v2cuwgoB679
Bhi10G000989Bottle gourd (USVL1VR-Ls)lsiwgoB127
Bhi10G000989Melon (DHL92) v3.6.1medwgoB122
Bhi10G000989Melon (DHL92) v3.6.1medwgoB236
Bhi10G000989Melon (DHL92) v3.5.1mewgoB122
Bhi10G000989Melon (DHL92) v3.5.1mewgoB126
Bhi10G000989Melon (DHL92) v3.5.1mewgoB235
Bhi10G000989Watermelon (Charleston Gray)wcgwgoB305
Bhi10G000989Silver-seed gourdcarwgoB0433
Bhi10G000989Silver-seed gourdcarwgoB0999