Bhi06G000418 (gene) Wax gourd

Overview
NameBhi06G000418
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionProtein Ycf2
Locationchr6 : 11470676 .. 11470982 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGTTCGAGAGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCCGCAACATCTCAAGGTGGATTTATTCAATCACATAGTTTGGGCTTCTAGAATATGGCGCCCTTGGGCTTTTTATATGATTGTATCGAAAGGCCCAATGAATTGGGATTTTCCTATTGGACTAGGTCATTTCAGGGCAAGCAGATCATTTATGATGAAGATGGTGAGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACTAG

mRNA sequence

ATGGATCTTGTTCGAGAGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCCGCAACATCTCAAGGTCATTTCAGGGCAAGCAGATCATTTATGATGAAGATGGTGAGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACTAG

Coding sequence (CDS)

ATGGATCTTGTTCGAGAGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCCGCAACATCTCAAGGTCATTTCAGGGCAAGCAGATCATTTATGATGAAGATGGTGAGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACTAG

Protein sequence

MDLVRELIRDFSMNNTNRSLKKGKEKESSTRNISRSFQGKQIIYDEDGELQENDSEFLQSGTVQY
Homology
[Close]
BLAST of Bhi06G000418 vs. Swiss-Prot
Match: sp|B2LMN7|YCF2_GUIAB (Protein Ycf2 OS=Guizotia abyssinica OX=4230 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-08
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 2083 SRSFRGKRIIYDEEDELQENDSEFLQSGTVQY 2114

[Close]
BLAST of Bhi06G000418 vs. Swiss-Prot
Match: sp|Q2QD30|YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-08
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            +RSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 1809 ARSFRGKRIIYDEEDELQENDSEFLQSGTVQY 1840

[Close]
BLAST of Bhi06G000418 vs. Swiss-Prot
Match: sp|Q3C1N4|YCF2_NICSY (Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-08
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2103 SRSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2134

[Close]
BLAST of Bhi06G000418 vs. Swiss-Prot
Match: sp|Q33BV3|YCF2_NICTO (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-08
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2103 SRSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2134

[Close]
BLAST of Bhi06G000418 vs. Swiss-Prot
Match: sp|P09976|YCF2_TOBAC (Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-08
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2103 SRSFRGKRIIYDEEDELQENDSEFLQSGTMQY 2134

[Close]
BLAST of Bhi06G000418 vs. TAIR10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 52.8 bits (125), Expect = 9.5e-08
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 36   SFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SF+GK+IIYDE  ELQENDSEFLQSGT+QY
Sbjct: 2119 SFRGKRIIYDEKYELQENDSEFLQSGTMQY 2148

[Close]
BLAST of Bhi06G000418 vs. TAIR10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 52.8 bits (125), Expect = 9.5e-08
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 36   SFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SF+GK+IIYDE  ELQENDSEFLQSGT+QY
Sbjct: 2119 SFRGKRIIYDEKYELQENDSEFLQSGTMQY 2148

[Close]
BLAST of Bhi06G000418 vs. TrEMBL
Match: tr|A0A1X9RP24|A0A1X9RP24_9ASTE (Protein Ycf2 OS=Hydrangea hydrangeoides OX=60130 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2121 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2152

[Close]
BLAST of Bhi06G000418 vs. TrEMBL
Match: tr|A0A1X9RNS5|A0A1X9RNS5_9ASTE (Protein Ycf2 OS=Hydrangea petiolaris OX=349476 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2122 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2153

[Close]
BLAST of Bhi06G000418 vs. TrEMBL
Match: tr|A0A2H4YLM7|A0A2H4YLM7_9ASTE (Protein Ycf2 OS=Hydrangea heteromalla OX=860753 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2121 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2152

[Close]
BLAST of Bhi06G000418 vs. TrEMBL
Match: tr|A0A1W5WQN8|A0A1W5WQN8_9ASTR (Protein Ycf2 OS=Diplostephium frontinense OX=1716012 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 2092 SRSFRGKRIIYDEEDELQENDSEFLQSGTVQY 2123

[Close]
BLAST of Bhi06G000418 vs. TrEMBL
Match: tr|A0A2K9RIC4|A0A2K9RIC4_9ASTR (Protein Ycf2 OS=Cirsium eriophorum OX=688286 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 2093 SRSFRGKRIIYDEEDELQENDSEFLQSGTVQY 2124

[Close]
BLAST of Bhi06G000418 vs. NCBI nr
Match: YP_009379569.1 (Ycf2 (chloroplast) [Hydrangea petiolaris] >YP_009379589.1 Ycf2 (chloroplast) [Hydrangea petiolaris] >ARQ81802.1 Ycf2 (chloroplast) [Hydrangea petiolaris] >ARQ81822.1 Ycf2 (chloroplast) [Hydrangea petiolaris])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2122 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2153

[Close]
BLAST of Bhi06G000418 vs. NCBI nr
Match: YP_009379657.1 (Ycf2 (chloroplast) [Hydrangea hydrangeoides] >YP_009379677.1 Ycf2 (chloroplast) [Hydrangea hydrangeoides] >ARQ81890.1 Ycf2 (chloroplast) [Hydrangea hydrangeoides] >ARQ81910.1 Ycf2 (chloroplast) [Hydrangea hydrangeoides])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2121 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2152

[Close]
BLAST of Bhi06G000418 vs. NCBI nr
Match: AUF33439.1 (Ycf2 (chloroplast) [Hydrangea heteromalla] >AUF33440.1 Ycf2 (chloroplast) [Hydrangea heteromalla])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSFQGK+IIYDE+ ELQENDSEFLQSGT+QY
Sbjct: 2121 SRSFQGKRIIYDEEDELQENDSEFLQSGTMQY 2152

[Close]
BLAST of Bhi06G000418 vs. NCBI nr
Match: YP_004465231.1 (hypothetical chloroplast RF21 [Jacobaea vulgaris] >YP_004465251.1 hypothetical chloroplast RF21 [Jacobaea vulgaris] >ADO15455.1 hypothetical chloroplast RF21 (chloroplast) [Jacobaea vulgaris] >ADO15475.1 hypothetical chloroplast RF21 (chloroplast) [Jacobaea vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 2023 SRSFRGKRIIYDEEDELQENDSEFLQSGTVQY 2054

[Close]
BLAST of Bhi06G000418 vs. NCBI nr
Match: YP_007353810.1 (hypothetical chloroplast RF2 (chloroplast) [Chrysanthemum x morifolium] >AFA45319.1 hypothetical chloroplast RF2 (chloroplast) [Chrysanthemum x morifolium])

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 34   SRSFQGKQIIYDEDGELQENDSEFLQSGTVQY 66
            SRSF+GK+IIYDE+ ELQENDSEFLQSGTVQY
Sbjct: 2098 SRSFRGKRIIYDEEDELQENDSEFLQSGTVQY 2129

The following BLAST results are available for this feature:
BLAST of Bhi06G000418 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B2LMN7|YCF2_GUIAB2.4e-0887.50Protein Ycf2 OS=Guizotia abyssinica OX=4230 GN=ycf2-A PE=3 SV=1[more]
sp|Q2QD30|YCF2_CUCSA5.3e-0884.38Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1[more]
sp|Q3C1N4|YCF2_NICSY5.3e-0884.38Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1[more]
sp|Q33BV3|YCF2_NICTO5.3e-0884.38Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1[more]
sp|P09976|YCF2_TOBAC5.3e-0884.38Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2[more]
BLAST of Bhi06G000418 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.19.5e-0883.33Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.19.5e-0883.33Chloroplast Ycf2;ATPase, AAA type, core[more]
BLAST of Bhi06G000418 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1X9RP24|A0A1X9RP24_9ASTE3.7e-0687.50Protein Ycf2 OS=Hydrangea hydrangeoides OX=60130 GN=ycf2 PE=3 SV=1[more]
tr|A0A1X9RNS5|A0A1X9RNS5_9ASTE3.7e-0687.50Protein Ycf2 OS=Hydrangea petiolaris OX=349476 GN=ycf2 PE=3 SV=1[more]
tr|A0A2H4YLM7|A0A2H4YLM7_9ASTE3.7e-0687.50Protein Ycf2 OS=Hydrangea heteromalla OX=860753 GN=ycf2 PE=3 SV=1[more]
tr|A0A1W5WQN8|A0A1W5WQN8_9ASTR4.8e-0687.50Protein Ycf2 OS=Diplostephium frontinense OX=1716012 GN=ycf2 PE=3 SV=1[more]
tr|A0A2K9RIC4|A0A2K9RIC4_9ASTR4.8e-0687.50Protein Ycf2 OS=Cirsium eriophorum OX=688286 GN=ycf2 PE=3 SV=1[more]
BLAST of Bhi06G000418 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009379569.15.6e-0687.50Ycf2 (chloroplast) [Hydrangea petiolaris] >YP_009379589.1 Ycf2 (chloroplast) [Hy... [more]
YP_009379657.15.6e-0687.50Ycf2 (chloroplast) [Hydrangea hydrangeoides] >YP_009379677.1 Ycf2 (chloroplast) ... [more]
AUF33439.15.6e-0687.50Ycf2 (chloroplast) [Hydrangea heteromalla] >AUF33440.1 Ycf2 (chloroplast) [Hydra... [more]
YP_004465231.17.3e-0687.50hypothetical chloroplast RF21 [Jacobaea vulgaris] >YP_004465251.1 hypothetical c... [more]
YP_007353810.17.3e-0687.50hypothetical chloroplast RF2 (chloroplast) [Chrysanthemum x morifolium] >AFA4531... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000418Bhi06M000418mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..65

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G000418Melon (DHL92) v3.5.1mewgoB022
Bhi06G000418Wax gourdwgowgoB001
Bhi06G000418Wax gourdwgowgoB042
Bhi06G000418Cucumber (Gy14) v1cgywgoB138
Bhi06G000418Cucumber (Gy14) v1cgywgoB308
Bhi06G000418Cucumber (Gy14) v1cgywgoB405
Bhi06G000418Cucumber (Gy14) v1cgywgoB679
Bhi06G000418Cucumber (Gy14) v2cgybwgoB002
Bhi06G000418Cucumber (Gy14) v2cgybwgoB008
Bhi06G000418Cucumber (Gy14) v2cgybwgoB255
Bhi06G000418Cucumber (Gy14) v2cgybwgoB447
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0054
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0100
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0238
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0314
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0380
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0503
Bhi06G000418Cucurbita maxima (Rimu)cmawgoB0839
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0048
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0097
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0231
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0302
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0374
Bhi06G000418Cucurbita moschata (Rifu)cmowgoB0836
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0024
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0239
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0502
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0625
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0769
Bhi06G000418Cucurbita pepo (Zucchini)cpewgoB0835
Bhi06G000418Wild cucumber (PI 183967)cpiwgoB009
Bhi06G000418Wild cucumber (PI 183967)cpiwgoB003
Bhi06G000418Wild cucumber (PI 183967)cpiwgoB267
Bhi06G000418Wild cucumber (PI 183967)cpiwgoB473
Bhi06G000418Cucumber (Chinese Long) v3cucwgoB003
Bhi06G000418Cucumber (Chinese Long) v3cucwgoB009
Bhi06G000418Cucumber (Chinese Long) v3cucwgoB270
Bhi06G000418Cucumber (Chinese Long) v3cucwgoB482
Bhi06G000418Cucumber (Chinese Long) v2cuwgoB002
Bhi06G000418Cucumber (Chinese Long) v2cuwgoB007
Bhi06G000418Cucumber (Chinese Long) v2cuwgoB267
Bhi06G000418Cucumber (Chinese Long) v2cuwgoB470
Bhi06G000418Bottle gourd (USVL1VR-Ls)lsiwgoB207
Bhi06G000418Bottle gourd (USVL1VR-Ls)lsiwgoB210
Bhi06G000418Bottle gourd (USVL1VR-Ls)lsiwgoB313
Bhi06G000418Melon (DHL92) v3.6.1medwgoB020
Bhi06G000418Melon (DHL92) v3.6.1medwgoB152
Bhi06G000418Melon (DHL92) v3.6.1medwgoB392
Bhi06G000418Melon (DHL92) v3.5.1mewgoB149
Bhi06G000418Melon (DHL92) v3.5.1mewgoB391
Bhi06G000418Watermelon (Charleston Gray)wcgwgoB016
Bhi06G000418Watermelon (Charleston Gray)wcgwgoB020
Bhi06G000418Watermelon (Charleston Gray)wcgwgoB111
Bhi06G000418Watermelon (Charleston Gray)wcgwgoB508
Bhi06G000418Watermelon (97103) v2wgowmbB114
Bhi06G000418Watermelon (97103) v2wgowmbB151
Bhi06G000418Watermelon (97103) v1wgowmB115
Bhi06G000418Watermelon (97103) v1wgowmB122
Bhi06G000418Silver-seed gourdcarwgoB0339
Bhi06G000418Silver-seed gourdcarwgoB0443
Bhi06G000418Silver-seed gourdcarwgoB0451
Bhi06G000418Silver-seed gourdcarwgoB0523
Bhi06G000418Silver-seed gourdcarwgoB0597
Bhi06G000418Silver-seed gourdcarwgoB0801
Bhi06G000418Silver-seed gourdcarwgoB1174