Bhi04G000042 (gene) Wax gourd

Overview
NameBhi04G000042
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionWRKY DNA-binding protein 40
Locationchr4 : 1408969 .. 1409223 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACAAAGAAGCTTGGAAGATAAGTCAATGGTCATAGTCACATACGATGGTCACCACAACCATCAAAATGGCTCTCCTTCTCCGCTTTCAACCTCTCGACGACGGTCTTCGTCTCTATCTTCTCCGGCGGCCGTCCGTCGTTTGCCACTTCCACTGCCGCCTTTGTCACCACCGCTTTGGGTGGAGAGCAACCGAGTTGTTCCACCAGTGTCGCTCGATCTCGATCTTACTCTTTCGAGAGACAAAACATATTAA

mRNA sequence

GTACAAAGAAGCTTGGAAGATAAGTCAATGGTCATAGTCACATACGATGGTCACCACAACCATCAAAATGGCTCTCCTTCTCCGCTTTCAACCTCTCGACGACGGTCTTCGTCTCTATCTTCTCCGGCGGCCGTCCGTCGTTTGCCACTTCCACTGCCGCCTTTGTCACCACCGCTTTGGGTGGAGAGCAACCGAGTTGTTCCACCAGTGTCGCTCGATCTCGATCTTACTCTTTCGAGAGACAAAACATATTAA

Coding sequence (CDS)

GTACAAAGAAGCTTGGAAGATAAGTCAATGGTCATAGTCACATACGATGGTCACCACAACCATCAAAATGGCTCTCCTTCTCCGCTTTCAACCTCTCGACGACGGTCTTCGTCTCTATCTTCTCCGGCGGCCGTCCGTCGTTTGCCACTTCCACTGCCGCCTTTGTCACCACCGCTTTGGGTGGAGAGCAACCGAGTTGTTCCACCAGTGTCGCTCGATCTCGATCTTACTCTTTCGAGAGACAAAACATATTAA

Protein sequence

VQRSLEDKSMVIVTYDGHHNHQNGSPSPLSTSRRRSSSLSSPAAVRRLPLPLPPLSPPLWVESNRVVPPVSLDLDLTLSRDKTY
Homology
[Close]
BLAST of Bhi04G000042 vs. TAIR10
Match: AT1G80840.1 (WRKY DNA-binding protein 40)

HSP 1 Score: 41.2 bits (95), Expect = 3.7e-04
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 1   VQRSLEDKSMVIVTYDGHHNH----QNGSPSPLSTXXXXXXXLSSPAAVRRLPLPLPPLS 60
           VQRS+ED+S+++ TY+G HNH    Q  S + L+         S+P A  R      P++
Sbjct: 183 VQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPVT 242

Query: 61  PPLWVESNRVVPPVS 72
               +ES +V  P S
Sbjct: 243 TVDMIESKKVTSPTS 257

[Close]
BLAST of Bhi04G000042 vs. NCBI nr
Match: XP_022132094.1 (WRKY transcription factor WRKY76-like [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 41/79 (51.90%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 1   VQRSLEDKSMVIVTYDGHHNHQNGSPSPLSTXXXXXXXLSSPAAVRRLPLPLPPLSPPLW 60
           VQRSLEDKSMV+V+Y   HNH+  SPS  ST        SSP  V  LP      S P  
Sbjct: 137 VQRSLEDKSMVMVSYQDQHNHECDSPSHGSTRPFLSR--SSPVVVHCLP------STP-- 196

Query: 61  VESNRVVPPVSLDLDLTLS 80
              N  VP VSLDLDLTL+
Sbjct: 197 --CNATVPLVSLDLDLTLA 203

The following BLAST results are available for this feature:
BLAST of Bhi04G000042 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04G000042 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80840.13.7e-0434.67WRKY DNA-binding protein 40[more]
BLAST of Bhi04G000042 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi04G000042 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132094.13.6e-0551.90WRKY transcription factor WRKY76-like [Momordica charantia][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000042Bhi04M000042mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..48

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G000042Wax gourdwgowgoB091
Bhi04G000042Cucumber (Gy14) v1cgywgoB313
Bhi04G000042Cucumber (Gy14) v1cgywgoB548
Bhi04G000042Cucumber (Gy14) v2cgybwgoB151
Bhi04G000042Cucumber (Gy14) v2cgybwgoB369
Bhi04G000042Cucurbita maxima (Rimu)cmawgoB0017
Bhi04G000042Cucurbita maxima (Rimu)cmawgoB0195
Bhi04G000042Cucurbita maxima (Rimu)cmawgoB0945
Bhi04G000042Cucurbita moschata (Rifu)cmowgoB0009
Bhi04G000042Cucurbita moschata (Rifu)cmowgoB0191
Bhi04G000042Cucurbita moschata (Rifu)cmowgoB0945
Bhi04G000042Cucurbita pepo (Zucchini)cpewgoB0142
Bhi04G000042Cucurbita pepo (Zucchini)cpewgoB0980
Bhi04G000042Cucurbita pepo (Zucchini)cpewgoB1029
Bhi04G000042Wild cucumber (PI 183967)cpiwgoB154
Bhi04G000042Wild cucumber (PI 183967)cpiwgoB390
Bhi04G000042Cucumber (Chinese Long) v3cucwgoB163
Bhi04G000042Cucumber (Chinese Long) v3cucwgoB392
Bhi04G000042Cucumber (Chinese Long) v2cuwgoB156
Bhi04G000042Cucumber (Chinese Long) v2cuwgoB387
Bhi04G000042Bottle gourd (USVL1VR-Ls)lsiwgoB364
Bhi04G000042Bottle gourd (USVL1VR-Ls)lsiwgoB592
Bhi04G000042Melon (DHL92) v3.6.1medwgoB342
Bhi04G000042Melon (DHL92) v3.6.1medwgoB593
Bhi04G000042Melon (DHL92) v3.5.1mewgoB343
Bhi04G000042Melon (DHL92) v3.5.1mewgoB587
Bhi04G000042Watermelon (Charleston Gray)wcgwgoB458
Bhi04G000042Watermelon (Charleston Gray)wcgwgoB613
Bhi04G000042Watermelon (97103) v2wgowmbB307
Bhi04G000042Watermelon (97103) v2wgowmbB314
Bhi04G000042Watermelon (97103) v1wgowmB298
Bhi04G000042Watermelon (97103) v1wgowmB335
Bhi04G000042Silver-seed gourdcarwgoB0173
Bhi04G000042Silver-seed gourdcarwgoB0750
Bhi04G000042Silver-seed gourdcarwgoB1142